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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027053 through 18771 annotations produced 1 hits



JUN activation domain-binding protein-1 (CSN5):

Annotation Number : CG14884
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027053
Gbrowse : chr3R:12295822-12297128 (+) // 99.5 //
Probeset : 1632776_at
Accessions : protein= NP_477442;, nucleotide= NM_058094;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 000
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from elec
FlyMine data for FBgn0027053.
BDGP gene expression has embryonic in situ data for CSN5: 4 pix of staining in 1 body parts.
BioGrid reports that CG14884 interacts with CG6932 CG7916 CG6196 CG17610 CG10079 CG4252 CG9556 CG2038 .
TRiP has 2 RNAi stocks for FBgn0027053 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain134 ± 44 of 4 0.60Down
Head127 ± 64 of 4 0.60Down
Eye188 ± 24 of 4 0.83Down
Thoracicoabdominal ganglion137 ± 44 of 4 0.60Down
Salivary gland173 ± 214 of 4 0.76None
Crop155 ± 94 of 4 0.70Down
Midgut191 ± 114 of 4 0.80None
Tubule183 ± 24 of 4 0.80Down
Hindgut140 ± 74 of 4 0.60Down
Heart167 ± 74 of 4 0.74Down
Fat body167 ± 164 of 4 0.73Down
Ovary395 ± 34 of 4 1.70Up
Testis176 ± 74 of 4 0.80Down
Male accessory glands243 ± 104 of 4 1.10None
Virgin spermatheca203 ± 44 of 4 0.89None
Mated spermatheca190 ± 114 of 4 0.84Down
Adult carcass127 ± 14 of 4 0.60Down
Larval CNS467 ± 224 of 4 2.05Up
Larval Salivary gland314 ± 94 of 4 1.38Up
Larval midgut198 ± 74 of 4 0.87None
Larval tubule338 ± 104 of 4 1.50Up
Larval hindgut197 ± 154 of 4 0.86None
Larval fat body329 ± 134 of 4 1.40Up
Larval trachea373 ± 224 of 4 1.64Up
Larval carcass258 ± 164 of 4 1.13None
S2 cells (growing)317 ± 124 of 4 1.39Up
Whole fly228 ± 104 of 4

Looking for FBgn0027053. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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