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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027057 through 18771 annotations produced 1 hits



COP9 complex homolog subunit 1-2 (CSN1b):

Annotation Number : CG3889
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027057
Gbrowse : chr3L:18896052-18898117 (-) // 100.0 //
Probeset : 1624386_at
Accessions : protein= NP_524152;, nucleotide= NM_079428;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
Interpro : 0019781 // NEDD8 activating enzyme activity // inferred from mutant phenotype
FlyMine data for FBgn0027057.
BDGP gene expression has embryonic in situ data for CSN1b: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0027057 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027057 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 ± 54 of 4 0.90None
Head182 ± 54 of 4 1.00None
Eye279 ± 54 of 4 1.48Up
Thoracicoabdominal ganglion193 ± 84 of 4 1.00None
Salivary gland239 ± 84 of 4 1.27Up
Crop198 ± 64 of 4 1.10None
Midgut139 ± 44 of 4 0.70Down
Tubule243 ± 44 of 4 1.30Up
Hindgut155 ± 34 of 4 0.80None
Heart184 ± 64 of 4 0.98None
Fat body183 ± 94 of 4 0.97None
Ovary269 ± 34 of 4 1.40Up
Testis179 ± 94 of 4 1.00None
Male accessory glands161 ± 54 of 4 0.90None
Virgin spermatheca180 ± 74 of 4 0.96None
Mated spermatheca209 ± 164 of 4 1.11None
Adult carcass156 ± 44 of 4 0.80None
Larval CNS315 ± 114 of 4 1.67Up
Larval Salivary gland316 ± 94 of 4 1.67Up
Larval midgut138 ± 94 of 4 0.73Down
Larval tubule319 ± 74 of 4 1.70Up
Larval hindgut193 ± 64 of 4 1.03None
Larval fat body184 ± 44 of 4 1.00None
Larval trachea161 ± 184 of 4 0.86None
Larval carcass181 ± 104 of 4 0.96None
S2 cells (growing)216 ± 64 of 4 1.15None
Whole fly188 ± 124 of 4

Looking for FBgn0027057. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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