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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027070 through 18771 annotations produced 1 hits



(CG17322):

Annotation Number : CG17322
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027070
Gbrowse : chr2L:18826771-18829061 (+) // 100.0 //
Probeset : 1640870_s_at
Accessions : protein= NP_609911; /// NP_724133; /// NP_724134; /// NP_724135;, nucleotide= NM_136067; /// NM_165263; /// NM_165264; /// NM_165265;
Interpro : "0003851 // 2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity // inferred from sequence or structural simil
FlyMine data for FBgn0027070.
BDGP gene expression has embryonic in situ data for BEST:LD25345: 4 pix of staining in 1 body parts.
Homophila reports that CG17322 is a close match (2e-40) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 2 RNAi stocks for FBgn0027070 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 14 of 4 0.10Down
Head142 ± 64 of 4 1.30Up
Eye151 ± 84 of 4 1.40Up
Thoracicoabdominal ganglion11 ± 02 of 4 0.10Down
Salivary gland101 ± 74 of 4 0.94None
Crop151 ± 54 of 4 1.40Up
Midgut21 ± 22 of 4 0.20Down
Tubule138 ± 34 of 4 1.30Up
Hindgut116 ± 34 of 4 1.10None
Heart201 ± 174 of 4 1.86Up
Fat body233 ± 364 of 4 2.16Up
Ovary164 ± 54 of 4 1.50Up
Testis7 ± 03 of 4 0.10Down
Male accessory glands152 ± 194 of 4 1.40None
Virgin spermatheca150 ± 74 of 4 1.39Up
Mated spermatheca164 ± 154 of 4 1.52Up
Adult carcass155 ± 24 of 4 1.40Up
Larval CNS14 ± 14 of 4 0.14Down
Larval Salivary gland8 ± 00 of 4 0.08Down
Larval midgut6 ± 10 of 4 0.06Down
Larval tubule221 ± 124 of 4 2.10Up
Larval hindgut25 ± 14 of 4 0.24Down
Larval fat body87 ± 114 of 4 0.80None
Larval trachea302 ± 494 of 4 2.79Up
Larval carcass38 ± 24 of 4 0.36Down
S2 cells (growing)6 ± 01 of 4 0.06Down
Whole fly108 ± 54 of 4

Looking for FBgn0027070. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime