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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0027074 through 18771 annotations produced 1 hits


Annotation Number : CG17324
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027074
Gbrowse : chr2L:18819343-18822573 (+) // 100.0 //
Probeset : 1634510_at
Accessions : protein= NP_609909;, nucleotide= NM_136065;
Interpro : "0008194 // UDP-glycosyltransferase activity // inferred from sequence or structural similarity /// 0016740 // transfera
FlyMine data for FBgn0027074.
BDGP gene expression has embryonic in situ data for BEST:GH06505: 4 pix of staining in 1 body parts.
Homophila reports that CG17324 is a close match (2e-43) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 3 RNAi stocks for FBgn0027074 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head35 14 of 411.70Up
Eye21 14 of 4 7.20Up
Thoracicoabdominal ganglion1 00 of 4 0.30None
Salivary gland6 20 of 4 2.11None
Crop3 10 of 4 1.30None
Midgut2 10 of 4 0.90None
Tubule1 00 of 4 0.30Down
Hindgut1 00 of 4 0.40None
Heart1 00 of 4 0.50None
Fat body1 00 of 4 0.31None
Ovary1 00 of 4 0.40None
Testis16 04 of 4 5.60Up
Male accessory glands6 30 of 4 2.00None
Virgin spermatheca2 10 of 4 0.76None
Mated spermatheca1 00 of 4 0.40None
Adult carcass23 13 of 4 7.90Up
Larval CNS0 00 of 4 0.29None
Larval Salivary gland1 00 of 4 0.45None
Larval midgut1 00 of 4 0.45None
Larval tubule7 20 of 4 2.30None
Larval hindgut0 00 of 4 0.30None
Larval fat body8 10 of 4 2.70Up
Larval trachea2 10 of 4 0.75None
Larval carcass4 10 of 4 1.64None
S2 cells (growing)1 00 of 4 0.58None
Whole fly3 00 of 4

Looking for FBgn0027074. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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