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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027079 through 18771 annotations produced 1 hits



Valyl-tRNA synthetase (Aats-val):

Annotation Number : CG4062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027079
Gbrowse : chr2R:9086355-9090217 (+) // 100.0 //
Probeset : 1638259_s_at
Accessions : protein= NP_524838; /// NP_725259;, nucleotide= NM_080099; /// NM_165970;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0027079.
BioGrid reports that CG4062 interacts with CG5939 CG4394 .
TRiP has 1 RNAi stocks for FBgn0027079 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027079 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 74 of 4 0.60Down
Head88 ± 54 of 4 0.70Down
Eye104 ± 104 of 4 0.78None
Thoracicoabdominal ganglion99 ± 44 of 4 0.70Down
Salivary gland146 ± 54 of 4 1.10None
Crop89 ± 24 of 4 0.70Down
Midgut155 ± 104 of 4 1.20None
Tubule152 ± 224 of 4 1.10None
Hindgut83 ± 24 of 4 0.60Down
Heart98 ± 24 of 4 0.74Down
Fat body148 ± 124 of 4 1.12None
Ovary199 ± 94 of 4 1.50Up
Testis35 ± 44 of 4 0.30Down
Male accessory glands150 ± 44 of 4 1.10None
Virgin spermatheca80 ± 44 of 4 0.60Down
Mated spermatheca107 ± 24 of 4 0.81Down
Adult carcass95 ± 84 of 4 0.70Down
Larval CNS149 ± 94 of 4 1.12None
Larval Salivary gland298 ± 164 of 4 2.24Up
Larval midgut132 ± 94 of 4 0.99None
Larval tubule78 ± 24 of 4 0.60Down
Larval hindgut109 ± 64 of 4 0.82Down
Larval fat body66 ± 84 of 4 0.50Down
Larval trachea176 ± 404 of 4 1.33None
Larval carcass222 ± 224 of 4 1.67Up
S2 cells (growing)519 ± 24 of 4 3.90Up
Whole fly133 ± 64 of 4

Looking for FBgn0027079. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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