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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027080 through 18771 annotations produced 1 hits



Tyrosyl-tRNA synthetase (Aats-tyr):

Annotation Number : CG4561
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027080
Gbrowse : chr3L:16410446-16412395 (-) // 100.0 //
Probeset : 1632234_at
Accessions : protein= NP_648895;, nucleotide= NM_140638;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electr
FlyMine data for FBgn0027080.
Homophila reports that CG4561 is a close match (3e-176) to human gene CMTDIC;TYRRS;YARS;YRS;YTS (NP_003671), a gene associated with Charcot-Marie-Tooth disease, dominant intermediate C, 608323 (3).
BioGrid reports that CG4561 interacts with CG6416 .
VDRC has 2 RNAi stocks for FBgn0027080 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 ± 34 of 4 0.60Down
Head211 ± 234 of 4 0.80None
Eye266 ± 54 of 4 1.07None
Thoracicoabdominal ganglion356 ± 124 of 4 1.40Up
Salivary gland216 ± 144 of 4 0.87None
Crop257 ± 94 of 4 1.00None
Midgut281 ± 74 of 4 1.10None
Tubule344 ± 254 of 4 1.40Up
Hindgut257 ± 94 of 4 1.00None
Heart273 ± 174 of 4 1.10None
Fat body342 ± 244 of 4 1.37Up
Ovary279 ± 64 of 4 1.10None
Testis86 ± 44 of 4 0.30Down
Male accessory glands345 ± 184 of 4 1.40Up
Virgin spermatheca351 ± 204 of 4 1.41Up
Mated spermatheca392 ± 144 of 4 1.57Up
Adult carcass260 ± 64 of 4 1.00None
Larval CNS243 ± 254 of 4 0.98None
Larval Salivary gland368 ± 134 of 4 1.48Up
Larval midgut276 ± 94 of 4 1.11None
Larval tubule339 ± 154 of 4 1.40Up
Larval hindgut283 ± 74 of 4 1.14None
Larval fat body272 ± 264 of 4 1.10None
Larval trachea357 ± 214 of 4 1.44Up
Larval carcass423 ± 254 of 4 1.70Up
S2 cells (growing)581 ± 204 of 4 2.33Up
Whole fly249 ± 184 of 4

Looking for FBgn0027080. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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