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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027085 through 18771 annotations produced 1 hits



Leucyl-tRNA synthetase (Aats-leu):

Annotation Number : CG7479
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027085
Gbrowse : chr3L:4825857-4829039 (+) // 100.0 //
Probeset : 1623460_at
Accessions : protein= NP_647932;, nucleotide= NM_139675;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0027085.
VDRC has 2 RNAi stocks for FBgn0027085 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain115 24 of 4 1.50Up
Head62 24 of 4 0.80Down
Eye62 24 of 4 0.82Down
Thoracicoabdominal ganglion134 34 of 4 1.80Up
Salivary gland114 94 of 4 1.49Up
Crop80 04 of 4 1.00None
Midgut70 34 of 4 0.90None
Tubule92 24 of 4 1.20Up
Hindgut65 44 of 4 0.80None
Heart66 54 of 4 0.86None
Fat body89 74 of 4 1.17Up
Ovary168 34 of 4 2.20Up
Testis27 24 of 4 0.40Down
Male accessory glands79 54 of 4 1.00None
Virgin spermatheca43 44 of 4 0.57Down
Mated spermatheca49 54 of 4 0.65Down
Adult carcass73 44 of 4 1.00None
Larval CNS92 74 of 4 1.21Up
Larval Salivary gland82 44 of 4 1.08None
Larval midgut62 04 of 4 0.81Down
Larval tubule64 34 of 4 0.80Down
Larval hindgut77 14 of 4 1.01None
Larval fat body30 14 of 4 0.40Down
Larval trachea59 14 of 4 0.77Down
Larval carcass86 64 of 4 1.13None
S2 cells (growing)98 34 of 4 1.29Up
Whole fly76 14 of 4

Looking for FBgn0027085. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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