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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027087 through 18771 annotations produced 1 hits



Histidyl-tRNA synthetase (Aats-his):

Annotation Number : CG6335
Flybase ID : FBgn0027087
Gbrowse : chrX:18409431-18414480 (+) // 100.0 //
Probeset : 1631877_a_at
Accessions : protein= NP_573305; /// NP_728180;, nucleotide= NM_133077; /// NM_167624;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0027087.
VDRC has 2 RNAi stocks for FBgn0027087 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain128 14 of 4 0.80None
Head127 24 of 4 0.80None
Eye65 74 of 4 0.39Down
Thoracicoabdominal ganglion154 64 of 4 0.90None
Salivary gland209 124 of 4 1.24None
Crop189 34 of 4 1.10None
Midgut184 44 of 4 1.10None
Tubule281 314 of 4 1.70Up
Hindgut172 14 of 4 1.00None
Heart116 24 of 4 0.69Down
Fat body172 144 of 4 1.02None
Ovary231 24 of 4 1.40Up
Testis47 24 of 4 0.30Down
Male accessory glands237 104 of 4 1.40Up
Virgin spermatheca155 74 of 4 0.92None
Mated spermatheca206 144 of 4 1.22None
Adult carcass129 64 of 4 0.80None
Larval CNS231 34 of 4 1.36Up
Larval Salivary gland269 224 of 4 1.59Up
Larval midgut156 44 of 4 0.92None
Larval tubule109 04 of 4 0.60Down
Larval hindgut163 74 of 4 0.96None
Larval fat body81 83 of 4 0.50Down
Larval trachea146 154 of 4 0.86None
Larval carcass240 204 of 4 1.42Up
S2 cells (growing)403 64 of 4 2.38Up
Whole fly169 154 of 4

Looking for FBgn0027087. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime