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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027088 through 18771 annotations produced 1 hits



Glycyl-tRNA synthetase (Aats-gly):

Annotation Number : CG6778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027088
Gbrowse : chr3L:15088255-15090790 (+) // 100.0 //
Probeset : 1636948_a_at
Accessions : protein= NP_648746; /// NP_730022;, nucleotide= NM_140489; /// NM_168605;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0027088.
Homophila reports that CG6778 is a close match (0) to human gene CMT2D;GARS;HMN5;SMAD1 (NP_002038), a gene associated with Charcot-Marie-Tooth disease, type 2D, 601472 (3);Neuropathy, distal hereditary motor, type V, 600794 (3).
VDRC has 3 RNAi stocks for FBgn0027088 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 ± 64 of 4 0.50Down
Head130 ± 54 of 4 0.50Down
Eye57 ± 44 of 4 0.23Down
Thoracicoabdominal ganglion167 ± 94 of 4 0.70Down
Salivary gland206 ± 54 of 4 0.83Down
Crop131 ± 34 of 4 0.50Down
Midgut213 ± 114 of 4 0.90Down
Tubule281 ± 254 of 4 1.10None
Hindgut126 ± 84 of 4 0.50Down
Heart95 ± 44 of 4 0.38Down
Fat body238 ± 224 of 4 0.96None
Ovary335 ± 134 of 4 1.30Up
Testis109 ± 44 of 4 0.40Down
Male accessory glands430 ± 194 of 4 1.70Up
Virgin spermatheca155 ± 74 of 4 0.63Down
Mated spermatheca193 ± 74 of 4 0.78Down
Adult carcass156 ± 84 of 4 0.60Down
Larval CNS446 ± 304 of 4 1.80Up
Larval Salivary gland769 ± 564 of 4 3.10Up
Larval midgut208 ± 174 of 4 0.84None
Larval tubule170 ± 84 of 4 0.70Down
Larval hindgut272 ± 124 of 4 1.09None
Larval fat body151 ± 124 of 4 0.60Down
Larval trachea287 ± 504 of 4 1.16None
Larval carcass312 ± 364 of 4 1.26None
S2 cells (growing)644 ± 44 of 4 2.59Up
Whole fly248 ± 74 of 4

Looking for FBgn0027088. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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