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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027090 through 18771 annotations produced 1 hits



Glutaminyl-tRNA synthetase (Aats-gln):

Annotation Number : CG10506
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027090
Gbrowse : chr3R:21088987-21091443 (-) // 100.0 //
Probeset : 1640088_at
Accessions : protein= NP_524841;, nucleotide= NM_080102;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred fr
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // i
FlyMine data for FBgn0027090.
BioGrid reports that CG10506 interacts with CG8327 .
VDRC has 1 RNAi stocks for FBgn0027090 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 ± 24 of 4 0.50Down
Head139 ± 84 of 4 0.70Down
Eye111 ± 34 of 4 0.56Down
Thoracicoabdominal ganglion116 ± 34 of 4 0.60Down
Salivary gland291 ± 74 of 4 1.46Up
Crop252 ± 94 of 4 1.30Up
Midgut155 ± 84 of 4 0.80Down
Tubule184 ± 124 of 4 0.90None
Hindgut202 ± 84 of 4 1.00None
Heart196 ± 114 of 4 0.99None
Fat body235 ± 274 of 4 1.18None
Ovary325 ± 74 of 4 1.60Up
Testis58 ± 44 of 4 0.30Down
Male accessory glands347 ± 104 of 4 1.70Up
Virgin spermatheca227 ± 164 of 4 1.14None
Mated spermatheca239 ± 104 of 4 1.20Up
Adult carcass184 ± 94 of 4 0.90None
Larval CNS249 ± 74 of 4 1.25Up
Larval Salivary gland443 ± 84 of 4 2.22Up
Larval midgut134 ± 64 of 4 0.67Down
Larval tubule163 ± 84 of 4 0.80None
Larval hindgut258 ± 44 of 4 1.30Up
Larval fat body145 ± 124 of 4 0.70Down
Larval trachea346 ± 324 of 4 1.74Up
Larval carcass273 ± 114 of 4 1.37Up
S2 cells (growing)381 ± 94 of 4 1.91Up
Whole fly199 ± 124 of 4

Looking for FBgn0027090. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime