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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027094 through 18771 annotations produced 1 hits



Alanyl-tRNA synthetase (Aats-ala):

Annotation Number : CG13391
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027094
Gbrowse : chr2L:8378255-8381756 (-) // 100.0 //
Probeset : 1639644_at
Accessions : protein= NP_523511; /// NP_995656;, nucleotide= NM_078787; /// NM_205934;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0027094.
BDGP gene expression has embryonic in situ data for Aats-ala: 12 pix of staining in 12 body parts.
VDRC has 2 RNAi stocks for FBgn0027094 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 14 of 4 0.30Down
Head95 34 of 4 0.50Down
Eye62 104 of 4 0.30Down
Thoracicoabdominal ganglion67 44 of 4 0.30Down
Salivary gland203 84 of 4 0.97None
Crop203 34 of 4 1.00None
Midgut141 84 of 4 0.70Down
Tubule218 184 of 4 1.00None
Hindgut149 64 of 4 0.70Down
Heart150 54 of 4 0.72Down
Fat body221 254 of 4 1.06None
Ovary279 34 of 4 1.30Up
Testis67 04 of 4 0.30Down
Male accessory glands200 44 of 4 1.00None
Virgin spermatheca133 94 of 4 0.64Down
Mated spermatheca188 94 of 4 0.90None
Adult carcass142 94 of 4 0.70Down
Larval CNS260 84 of 4 1.24Up
Larval Salivary gland494 374 of 4 2.36Up
Larval midgut113 74 of 4 0.54Down
Larval tubule73 54 of 4 0.30Down
Larval hindgut182 114 of 4 0.87None
Larval fat body80 64 of 4 0.40Down
Larval trachea390 594 of 4 1.86Up
Larval carcass248 114 of 4 1.19None
S2 cells (growing)590 34 of 4 2.82Up
Whole fly209 124 of 4

Looking for FBgn0027094. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime