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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027095 through 18771 annotations produced 1 hits



ARP-like (Manf):

Annotation Number : CG7013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027095
Gbrowse : chr3R:12175134-12176526 (+) // 100.0 //
Probeset : 1639410_at
Accessions : protein= NP_477445;, nucleotide= NM_058097;
Pathway : dopaminergic // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from ele
Interpro : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // non-traceable autho
FlyMine data for FBgn0027095.
BDGP gene expression has embryonic in situ data for ARP-like: 12 pix of staining in 11 body parts.
Homophila reports that CG7013 is a close match (4e-41) to human gene ARMET;ARP (NP_006001), a gene associated with Pancreatic cancer, 260350 (3).
VDRC has 3 RNAi stocks for FBgn0027095 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain314 ± 84 of 4 0.60Down
Head390 ± 134 of 4 0.70None
Eye438 ± 134 of 4 0.84None
Thoracicoabdominal ganglion331 ± 54 of 4 0.60Down
Salivary gland2391 ± 1624 of 4 4.58Up
Crop323 ± 254 of 4 0.60Down
Midgut611 ± 234 of 4 1.20None
Tubule358 ± 504 of 4 0.70Down
Hindgut279 ± 64 of 4 0.50Down
Heart1157 ± 614 of 4 2.22Up
Fat body628 ± 654 of 4 1.20None
Ovary674 ± 214 of 4 1.30Up
Testis338 ± 174 of 4 0.60Down
Male accessory glands4612 ± 1164 of 4 8.80Up
Virgin spermatheca1420 ± 884 of 4 2.72Up
Mated spermatheca1572 ± 1474 of 4 3.01Up
Adult carcass414 ± 174 of 4 0.80None
Larval CNS532 ± 264 of 4 1.02None
Larval Salivary gland4530 ± 1244 of 4 8.68Up
Larval midgut589 ± 344 of 4 1.13None
Larval tubule737 ± 244 of 4 1.40Up
Larval hindgut642 ± 304 of 4 1.23None
Larval fat body1181 ± 1854 of 4 2.30Up
Larval trachea869 ± 2134 of 4 1.67Up
Larval carcass799 ± 894 of 4 1.53Up
S2 cells (growing)1259 ± 184 of 4 2.41Up
Whole fly521 ± 494 of 4

Looking for FBgn0027095. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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