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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027101 through 18771 annotations produced 1 hits



unknown-telomeric-protein-gene (Dyrk3):

Annotation Number : CG40478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027101
Gbrowse : chr4:1228839-1234433 (-) // 100.0 //
Probeset : 1633143_s_at
Accessions : protein= NP_001033810; /// NP_001033811; /// NP_001033812; /// NP_001033813; /// NP_001033814;, nucleotide= NM_001038721; /// NM_001038722; /// NM_001038723; /// NM_001038724; /// NM_001038725;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0027101.
Homophila reports that CG40478 is a close match (7e-13) to human gene CMD1G;EOMFC;HMERF;LGMD2J;MPRM;TMD;TTN (NP_597681), a gene associated with Cardiomyopathy, dilated, 1G, 604145 (3);Cardiomyopathy, familial hypertrophic, 9 (3);Muscular dystrophy, limb-girdle, type 2J, 608807 (3);Myopathy, early-onset, with fatal cardiomyopathy, 611705 (3);Myopathy, proximal, with early respiratory muscle involvement, 603689 (3);Tibial muscular dystrophy, tardive, 600334 (3).
TRiP has 2 RNAi stocks for FBgn0027101 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain432 144 of 4 6.40Up
Head123 44 of 4 1.80Up
Eye142 84 of 4 2.09Up
Thoracicoabdominal ganglion379 134 of 4 5.60Up
Salivary gland101 74 of 4 1.49Up
Crop150 74 of 4 2.20Up
Midgut72 54 of 4 1.10None
Tubule123 84 of 4 1.80Up
Hindgut97 34 of 4 1.40Up
Heart91 44 of 4 1.35Up
Fat body124 84 of 4 1.84Up
Ovary93 14 of 4 1.40Up
Testis12 14 of 4 0.20Down
Male accessory glands61 34 of 4 0.90None
Virgin spermatheca180 64 of 4 2.65Up
Mated spermatheca171 74 of 4 2.52Up
Adult carcass74 64 of 4 1.10None
Larval CNS344 624 of 4 5.07Up
Larval Salivary gland130 64 of 4 1.93Up
Larval midgut91 94 of 4 1.34None
Larval tubule223 114 of 4 3.30Up
Larval hindgut127 134 of 4 1.87Up
Larval fat body252 284 of 4 3.70Up
Larval trachea118 14 of 4 1.74Up
Larval carcass175 44 of 4 2.58Up
S2 cells (growing)70 44 of 4 1.04None
Whole fly67 44 of 4

Looking for FBgn0027101. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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