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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0027109 through 18771 annotations produced 1 hits


neuropeptide F (npf):

Annotation Number : CG10342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027109
Gbrowse : chr3R:12435480-12436972 (+) // 100.0 //
Probeset : 1629703_at
Accessions : protein= NP_536741;, nucleotide= NM_080493;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0005179 // hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // infer
FlyMine data for FBgn0027109.
TRiP has 1 RNAi stocks for FBgn0027109 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027109 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain805 ± 114 of 421.70Up
Head260 ± 74 of 4 7.00Up
Eye10 ± 40 of 4 0.27Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland2 ± 00 of 4 0.08Down
Crop0 ± 00 of 4 0.00Down
Midgut338 ± 114 of 4 9.10Up
Tubule0 ± 00 of 4 0.00Down
Hindgut5 ± 20 of 4 0.10Down
Heart1 ± 10 of 4 0.05Down
Fat body1 ± 00 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands3 ± 20 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.07Down
Mated spermatheca4 ± 10 of 4 0.12Down
Adult carcass9 ± 40 of 4 0.30Down
Larval CNS289 ± 534 of 4 7.79Up
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut44 ± 61 of 4 1.19None
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.09Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.03Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly37 ± 63 of 4

Looking for FBgn0027109. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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