FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0027279 through 18771 annotations produced 5 hits

lethal (1) G0196 (l(1)G0196):

Annotation Number : CG14616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027279
Gbrowse : chrX:21889018-21905765 (+) // 100.0 //
Probeset : 1625785_at
Accessions : protein= NP_001097041; /// NP_788950; /// NP_788951; /// NP_788952; /// NP_788953;, nucleotide= NM_001103571; /// NM_176777; /// NM_176778; /// NM_176779; /// NM_176780;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1
FlyMine data for FBgn0027279.
BioGrid reports that CG14616 interacts with CG7238 .
VDRC has 1 RNAi stocks for FBgn0027279 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	4 of 4	0.40	None
Head	6 ± 1	2 of 4	0.40	Down
Eye	5 ± 1	1 of 4	0.33	Down
Thoracicoabdominal ganglion	5 ± 1	0 of 4	0.30	Down
Salivary gland	7 ± 2	0 of 4	0.39	Down
Crop	8 ± 1	3 of 4	0.50	None
Midgut	11 ± 0	0 of 4	0.70	None
Tubule	28 ± 2	4 of 4	1.60	Up
Hindgut	6 ± 1	3 of 4	0.30	Down
Heart	3 ± 0	0 of 4	0.19	Down
Fat body	13 ± 1	4 of 4	0.74	None
Ovary	42 ± 2	4 of 4	2.40	Up
Testis	181 ± 6	4 of 4	10.10	Up
Male accessory glands	23 ± 3	4 of 4	1.30	None
Virgin spermatheca	10 ± 1	4 of 4	0.58	None
Mated spermatheca	9 ± 1	3 of 4	0.53	None
Adult carcass	8 ± 1	0 of 4	0.50	None
Larval CNS	2 ± 1	1 of 4	0.14	Down
Larval Salivary gland	2 ± 1	0 of 4	0.13	Down
Larval midgut	8 ± 1	3 of 4	0.49	None
Larval tubule	5 ± 0	2 of 4	0.30	Down
Larval hindgut	2 ± 0	0 of 4	0.14	Down
Larval fat body	17 ± 7	2 of 4	1.00	None
Larval trachea	2 ± 3	0 of 4	0.16	Down
Larval carcass	1 ± 0	0 of 4	0.08	Down
S2 cells (growing)	10 ± 0	4 of 4	0.57	None
Whole fly	18 ± 3	4 of 4

lethal (1) G0196 (l(1)G0196):

Annotation Number : CG14616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027279
Gbrowse : chrX:21889018-21909287 (+) // 100.0 //
Probeset : 1624265_at
Accessions : protein= NP_001097041; /// NP_788950; /// NP_788951; /// NP_788952; /// NP_788953;, nucleotide= NM_001103571; /// NM_176777; /// NM_176778; /// NM_176779; /// NM_176780;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1
FlyMine data for FBgn0027279.
BioGrid reports that CG14616 interacts with CG7238 .
VDRC has 1 RNAi stocks for FBgn0027279 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	392 ± 20	4 of 4	20.60	Up
Head	65 ± 4	4 of 4	3.40	Up
Eye	73 ± 5	4 of 4	3.87	Up
Thoracicoabdominal ganglion	296 ± 10	4 of 4	15.60	Up
Salivary gland	37 ± 5	4 of 4	1.96	None
Crop	31 ± 1	4 of 4	1.70	Up
Midgut	22 ± 4	4 of 4	1.20	None
Tubule	49 ± 0	4 of 4	2.60	Up
Hindgut	37 ± 4	4 of 4	2.00	Up
Heart	34 ± 3	4 of 4	1.83	Up
Fat body	29 ± 6	4 of 4	1.53	None
Ovary	9 ± 1	1 of 4	0.50	Down
Testis	6 ± 1	2 of 4	0.30	Down
Male accessory glands	29 ± 1	1 of 4	1.50	Up
Virgin spermatheca	21 ± 0	4 of 4	1.15	Up
Mated spermatheca	21 ± 1	4 of 4	1.12	None
Adult carcass	40 ± 5	4 of 4	2.10	Up
Larval CNS	61 ± 9	4 of 4	3.25	Up
Larval Salivary gland	37 ± 5	4 of 4	1.96	Up
Larval midgut	21 ± 1	4 of 4	1.15	None
Larval tubule	33 ± 3	4 of 4	1.70	Up
Larval hindgut	17 ± 2	4 of 4	0.93	None
Larval fat body	28 ± 1	3 of 4	1.50	Up
Larval trachea	32 ± 8	4 of 4	1.73	None
Larval carcass	21 ± 1	4 of 4	1.13	None
S2 cells (growing)	61 ± 2	4 of 4	3.22	Up
Whole fly	19 ± 0	4 of 4

lethal (1) G0196 (l(1)G0196):

Annotation Number : CG14616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027279
Gbrowse : chrX:21889018-21904734 (+) // 100.0 //
Probeset : 1632658_a_at
Accessions : protein= NP_001097041; /// NP_788950; /// NP_788951; /// NP_788952; /// NP_788953;, nucleotide= NM_001103571; /// NM_176777; /// NM_176778; /// NM_176779; /// NM_176780;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1
FlyMine data for FBgn0027279.
BioGrid reports that CG14616 interacts with CG7238 .
VDRC has 1 RNAi stocks for FBgn0027279 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	187 ± 7	4 of 4	1.70	Up
Head	108 ± 2	4 of 4	1.00	None
Eye	75 ± 4	4 of 4	0.69	Down
Thoracicoabdominal ganglion	129 ± 14	4 of 4	1.20	None
Salivary gland	161 ± 15	4 of 4	1.49	Up
Crop	154 ± 2	4 of 4	1.40	Up
Midgut	145 ± 2	4 of 4	1.30	Up
Tubule	270 ± 11	4 of 4	2.50	Up
Hindgut	182 ± 4	4 of 4	1.70	Up
Heart	122 ± 7	4 of 4	1.14	None
Fat body	168 ± 16	4 of 4	1.55	Up
Ovary	129 ± 3	4 of 4	1.20	Up
Testis	68 ± 1	4 of 4	0.60	Down
Male accessory glands	148 ± 8	4 of 4	1.40	Up
Virgin spermatheca	107 ± 9	4 of 4	0.99	None
Mated spermatheca	81 ± 6	4 of 4	0.75	Down
Adult carcass	165 ± 7	4 of 4	1.50	Up
Larval CNS	59 ± 6	4 of 4	0.55	Down
Larval Salivary gland	175 ± 6	4 of 4	1.62	Up
Larval midgut	135 ± 3	4 of 4	1.26	Up
Larval tubule	233 ± 7	4 of 4	2.20	Up
Larval hindgut	142 ± 2	4 of 4	1.32	Up
Larval fat body	152 ± 6	4 of 4	1.40	Up
Larval trachea	84 ± 7	4 of 4	0.78	Down
Larval carcass	101 ± 5	4 of 4	0.94	None
S2 cells (growing)	468 ± 21	4 of 4	4.33	Up
Whole fly	108 ± 6	4 of 4

lethal (1) G0196 (l(1)G0196):

Annotation Number : CG14616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027279
Gbrowse : chrX:21889018-21904734 (+) // 100.0 //
Probeset : 1641542_at
Accessions : protein= NP_001097041; /// NP_788950; /// NP_788951; /// NP_788952; /// NP_788953;, nucleotide= NM_001103571; /// NM_176777; /// NM_176778; /// NM_176779; /// NM_176780;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1
FlyMine data for FBgn0027279.
BioGrid reports that CG14616 interacts with CG7238 .
VDRC has 1 RNAi stocks for FBgn0027279 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	65 ± 3	4 of 4	1.20	None
Head	21 ± 1	4 of 4	0.40	Down
Eye	35 ± 2	4 of 4	0.66	Down
Thoracicoabdominal ganglion	47 ± 6	4 of 4	0.90	None
Salivary gland	83 ± 11	4 of 4	1.55	None
Crop	51 ± 5	4 of 4	0.90	None
Midgut	31 ± 0	4 of 4	0.60	Down
Tubule	80 ± 2	4 of 4	1.50	Up
Hindgut	55 ± 1	4 of 4	1.00	None
Heart	46 ± 3	4 of 4	0.86	None
Fat body	68 ± 4	4 of 4	1.26	Up
Ovary	92 ± 4	4 of 4	1.70	Up
Testis	27 ± 2	4 of 4	0.50	Down
Male accessory glands	18 ± 3	3 of 4	0.30	Down
Virgin spermatheca	11 ± 0	4 of 4	0.22	Down
Mated spermatheca	10 ± 0	3 of 4	0.20	Down
Adult carcass	47 ± 2	4 of 4	0.90	None
Larval CNS	36 ± 3	4 of 4	0.67	Down
Larval Salivary gland	83 ± 10	4 of 4	1.55	None
Larval midgut	47 ± 3	4 of 4	0.87	None
Larval tubule	82 ± 5	4 of 4	1.50	Up
Larval hindgut	45 ± 4	4 of 4	0.84	None
Larval fat body	78 ± 6	4 of 4	1.50	Up
Larval trachea	37 ± 5	4 of 4	0.69	Down
Larval carcass	33 ± 2	4 of 4	0.62	Down
S2 cells (growing)	333 ± 10	4 of 4	6.17	Up
Whole fly	54 ± 4	4 of 4

lethal (1) G0196 (l(1)G0196):

Annotation Number : CG14616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027279
Gbrowse : chrX:21889018-21906262 (+) // 100.0 //
Probeset : 1633081_at
Accessions : protein= NP_001097041; /// NP_788950; /// NP_788951; /// NP_788952; /// NP_788953;, nucleotide= NM_001103571; /// NM_176777; /// NM_176778; /// NM_176779; /// NM_176780;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1
FlyMine data for FBgn0027279.
BioGrid reports that CG14616 interacts with CG7238 .
VDRC has 1 RNAi stocks for FBgn0027279 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	187 ± 10	4 of 4	0.80	None
Head	249 ± 40	4 of 4	1.00	None
Eye	239 ± 2	4 of 4	1.00	None
Thoracicoabdominal ganglion	217 ± 22	4 of 4	0.90	None
Salivary gland	239 ± 20	4 of 4	1.00	None
Crop	439 ± 18	4 of 4	1.80	Up
Midgut	284 ± 17	4 of 4	1.20	None
Tubule	827 ± 39	4 of 4	3.50	Up
Hindgut	475 ± 7	4 of 4	2.00	Up
Heart	442 ± 27	4 of 4	1.85	Up
Fat body	459 ± 60	4 of 4	1.92	Up
Ovary	498 ± 5	4 of 4	2.10	Up
Testis	35 ± 3	4 of 4	0.10	Down
Male accessory glands	203 ± 5	4 of 4	0.80	None
Virgin spermatheca	813 ± 32	4 of 4	3.39	Up
Mated spermatheca	663 ± 10	4 of 4	2.77	Up
Adult carcass	281 ± 17	4 of 4	1.20	None
Larval CNS	213 ± 23	4 of 4	0.89	None
Larval Salivary gland	527 ± 20	4 of 4	2.20	Up
Larval midgut	446 ± 12	4 of 4	1.86	Up
Larval tubule	647 ± 18	4 of 4	2.70	Up
Larval hindgut	530 ± 16	4 of 4	2.21	Up
Larval fat body	329 ± 24	4 of 4	1.40	Up
Larval trachea	218 ± 22	4 of 4	0.91	None
Larval carcass	321 ± 30	4 of 4	1.34	None
S2 cells (growing)	806 ± 17	4 of 4	3.36	Up
Whole fly	239 ± 24	4 of 4

Looking for FBgn0027279. 5 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720