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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027279 through 18771 annotations produced 5 hits



lethal (1) G0196 (l(1)G0196):

Annotation Number : CG14616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027279
Gbrowse : chrX:21889018-21909287 (+) // 100.0 //
Probeset : 1624265_at
Accessions : protein= NP_001097041; /// NP_788950; /// NP_788951; /// NP_788952; /// NP_788953;, nucleotide= NM_001103571; /// NM_176777; /// NM_176778; /// NM_176779; /// NM_176780;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1
FlyMine data for FBgn0027279.
BioGrid reports that CG14616 interacts with CG7238 .
VDRC has 1 RNAi stocks for FBgn0027279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain392 204 of 420.60Up
Head65 44 of 4 3.40Up
Eye73 54 of 4 3.87Up
Thoracicoabdominal ganglion296 104 of 415.60Up
Salivary gland37 54 of 4 1.96None
Crop31 14 of 4 1.70Up
Midgut22 44 of 4 1.20None
Tubule49 04 of 4 2.60Up
Hindgut37 44 of 4 2.00Up
Heart34 34 of 4 1.83Up
Fat body29 64 of 4 1.53None
Ovary9 11 of 4 0.50Down
Testis6 12 of 4 0.30Down
Male accessory glands29 11 of 4 1.50Up
Virgin spermatheca21 04 of 4 1.15Up
Mated spermatheca21 14 of 4 1.12None
Adult carcass40 54 of 4 2.10Up
Larval CNS61 94 of 4 3.25Up
Larval Salivary gland37 54 of 4 1.96Up
Larval midgut21 14 of 4 1.15None
Larval tubule33 34 of 4 1.70Up
Larval hindgut17 24 of 4 0.93None
Larval fat body28 13 of 4 1.50Up
Larval trachea32 84 of 4 1.73None
Larval carcass21 14 of 4 1.13None
S2 cells (growing)61 24 of 4 3.22Up
Whole fly19 04 of 4



lethal (1) G0196 (l(1)G0196):

Annotation Number : CG14616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027279
Gbrowse : chrX:21889018-21904734 (+) // 100.0 //
Probeset : 1632658_a_at
Accessions : protein= NP_001097041; /// NP_788950; /// NP_788951; /// NP_788952; /// NP_788953;, nucleotide= NM_001103571; /// NM_176777; /// NM_176778; /// NM_176779; /// NM_176780;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1
FlyMine data for FBgn0027279.
BioGrid reports that CG14616 interacts with CG7238 .
VDRC has 1 RNAi stocks for FBgn0027279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 74 of 4 1.70Up
Head108 24 of 4 1.00None
Eye75 44 of 4 0.69Down
Thoracicoabdominal ganglion129 144 of 4 1.20None
Salivary gland161 154 of 4 1.49Up
Crop154 24 of 4 1.40Up
Midgut145 24 of 4 1.30Up
Tubule270 114 of 4 2.50Up
Hindgut182 44 of 4 1.70Up
Heart122 74 of 4 1.14None
Fat body168 164 of 4 1.55Up
Ovary129 34 of 4 1.20Up
Testis68 14 of 4 0.60Down
Male accessory glands148 84 of 4 1.40Up
Virgin spermatheca107 94 of 4 0.99None
Mated spermatheca81 64 of 4 0.75Down
Adult carcass165 74 of 4 1.50Up
Larval CNS59 64 of 4 0.55Down
Larval Salivary gland175 64 of 4 1.62Up
Larval midgut135 34 of 4 1.26Up
Larval tubule233 74 of 4 2.20Up
Larval hindgut142 24 of 4 1.32Up
Larval fat body152 64 of 4 1.40Up
Larval trachea84 74 of 4 0.78Down
Larval carcass101 54 of 4 0.94None
S2 cells (growing)468 214 of 4 4.33Up
Whole fly108 64 of 4



lethal (1) G0196 (l(1)G0196):

Annotation Number : CG14616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027279
Gbrowse : chrX:21889018-21905765 (+) // 100.0 //
Probeset : 1625785_at
Accessions : protein= NP_001097041; /// NP_788950; /// NP_788951; /// NP_788952; /// NP_788953;, nucleotide= NM_001103571; /// NM_176777; /// NM_176778; /// NM_176779; /// NM_176780;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1
FlyMine data for FBgn0027279.
BioGrid reports that CG14616 interacts with CG7238 .
VDRC has 1 RNAi stocks for FBgn0027279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 14 of 4 0.40None
Head6 12 of 4 0.40Down
Eye5 11 of 4 0.33Down
Thoracicoabdominal ganglion5 10 of 4 0.30Down
Salivary gland7 20 of 4 0.39Down
Crop8 13 of 4 0.50None
Midgut11 00 of 4 0.70None
Tubule28 24 of 4 1.60Up
Hindgut6 13 of 4 0.30Down
Heart3 00 of 4 0.19Down
Fat body13 14 of 4 0.74None
Ovary42 24 of 4 2.40Up
Testis181 64 of 410.10Up
Male accessory glands23 34 of 4 1.30None
Virgin spermatheca10 14 of 4 0.58None
Mated spermatheca9 13 of 4 0.53None
Adult carcass8 10 of 4 0.50None
Larval CNS2 11 of 4 0.14Down
Larval Salivary gland2 10 of 4 0.13Down
Larval midgut8 13 of 4 0.49None
Larval tubule5 02 of 4 0.30Down
Larval hindgut2 00 of 4 0.14Down
Larval fat body17 72 of 4 1.00None
Larval trachea2 30 of 4 0.16Down
Larval carcass1 00 of 4 0.08Down
S2 cells (growing)10 04 of 4 0.57None
Whole fly18 34 of 4



lethal (1) G0196 (l(1)G0196):

Annotation Number : CG14616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027279
Gbrowse : chrX:21889018-21906262 (+) // 100.0 //
Probeset : 1633081_at
Accessions : protein= NP_001097041; /// NP_788950; /// NP_788951; /// NP_788952; /// NP_788953;, nucleotide= NM_001103571; /// NM_176777; /// NM_176778; /// NM_176779; /// NM_176780;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1
FlyMine data for FBgn0027279.
BioGrid reports that CG14616 interacts with CG7238 .
VDRC has 1 RNAi stocks for FBgn0027279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 104 of 4 0.80None
Head249 404 of 4 1.00None
Eye239 24 of 4 1.00None
Thoracicoabdominal ganglion217 224 of 4 0.90None
Salivary gland239 204 of 4 1.00None
Crop439 184 of 4 1.80Up
Midgut284 174 of 4 1.20None
Tubule827 394 of 4 3.50Up
Hindgut475 74 of 4 2.00Up
Heart442 274 of 4 1.85Up
Fat body459 604 of 4 1.92Up
Ovary498 54 of 4 2.10Up
Testis35 34 of 4 0.10Down
Male accessory glands203 54 of 4 0.80None
Virgin spermatheca813 324 of 4 3.39Up
Mated spermatheca663 104 of 4 2.77Up
Adult carcass281 174 of 4 1.20None
Larval CNS213 234 of 4 0.89None
Larval Salivary gland527 204 of 4 2.20Up
Larval midgut446 124 of 4 1.86Up
Larval tubule647 184 of 4 2.70Up
Larval hindgut530 164 of 4 2.21Up
Larval fat body329 244 of 4 1.40Up
Larval trachea218 224 of 4 0.91None
Larval carcass321 304 of 4 1.34None
S2 cells (growing)806 174 of 4 3.36Up
Whole fly239 244 of 4



lethal (1) G0196 (l(1)G0196):

Annotation Number : CG14616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027279
Gbrowse : chrX:21889018-21904734 (+) // 100.0 //
Probeset : 1641542_at
Accessions : protein= NP_001097041; /// NP_788950; /// NP_788951; /// NP_788952; /// NP_788953;, nucleotide= NM_001103571; /// NM_176777; /// NM_176778; /// NM_176779; /// NM_176780;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1
FlyMine data for FBgn0027279.
BioGrid reports that CG14616 interacts with CG7238 .
VDRC has 1 RNAi stocks for FBgn0027279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 34 of 4 1.20None
Head21 14 of 4 0.40Down
Eye35 24 of 4 0.66Down
Thoracicoabdominal ganglion47 64 of 4 0.90None
Salivary gland83 114 of 4 1.55None
Crop51 54 of 4 0.90None
Midgut31 04 of 4 0.60Down
Tubule80 24 of 4 1.50Up
Hindgut55 14 of 4 1.00None
Heart46 34 of 4 0.86None
Fat body68 44 of 4 1.26Up
Ovary92 44 of 4 1.70Up
Testis27 24 of 4 0.50Down
Male accessory glands18 33 of 4 0.30Down
Virgin spermatheca11 04 of 4 0.22Down
Mated spermatheca10 03 of 4 0.20Down
Adult carcass47 24 of 4 0.90None
Larval CNS36 34 of 4 0.67Down
Larval Salivary gland83 104 of 4 1.55None
Larval midgut47 34 of 4 0.87None
Larval tubule82 54 of 4 1.50Up
Larval hindgut45 44 of 4 0.84None
Larval fat body78 64 of 4 1.50Up
Larval trachea37 54 of 4 0.69Down
Larval carcass33 24 of 4 0.62Down
S2 cells (growing)333 104 of 4 6.17Up
Whole fly54 44 of 4

Looking for FBgn0027279. 5 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime