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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027296 through 18771 annotations produced 1 hits



lethal (1) G0144 (l(1)G0144):

Annotation Number : CG3073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027296
Gbrowse : chrX:2154235-2156560 (-) // 100.0 //
Probeset : 1631083_at
Accessions : protein= NP_569992;, nucleotide= NM_130636;
Pathway : 0005968 // Rab-protein geranylgeranyltransferase complex // inferred from sequence or structural similarity
Interpro : 0004663 // Rab geranylgeranyltransferase activity // inferred from sequence or structural similarity /// 0004663 // Rab
FlyMine data for FBgn0027296.
VDRC has 1 RNAi stocks for FBgn0027296 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain550 164 of 4 3.60Up
Head329 104 of 4 2.20Up
Eye91 64 of 4 0.60Down
Thoracicoabdominal ganglion1012 364 of 4 6.70Up
Salivary gland75 44 of 4 0.50Down
Crop50 24 of 4 0.30Down
Midgut51 24 of 4 0.30Down
Tubule39 24 of 4 0.30Down
Hindgut50 14 of 4 0.30Down
Heart48 24 of 4 0.32Down
Fat body109 174 of 4 0.72Down
Ovary278 64 of 4 1.80Up
Testis46 34 of 4 0.30Down
Male accessory glands64 04 of 4 0.40Down
Virgin spermatheca137 24 of 4 0.91None
Mated spermatheca144 64 of 4 0.95None
Adult carcass95 94 of 4 0.60Down
Larval CNS318 494 of 4 2.10Up
Larval Salivary gland59 44 of 4 0.39Down
Larval midgut48 44 of 4 0.32Down
Larval tubule29 24 of 4 0.20Down
Larval hindgut70 34 of 4 0.46Down
Larval fat body69 54 of 4 0.50Down
Larval trachea60 44 of 4 0.40Down
Larval carcass98 144 of 4 0.65Down
S2 cells (growing)141 24 of 4 0.93None
Whole fly152 64 of 4

Looking for FBgn0027296. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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