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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027329 through 18771 annotations produced 1 hits



lethal (1) G0022 (Tcp-1zeta):

Annotation Number : CG8231
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027329
Gbrowse : chrX:15640658-15643006 (+) // 100.0 //
Probeset : 1630132_at
Accessions : protein= NP_573066;, nucleotide= NM_132838;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from el
FlyMine data for FBgn0027329.
Homophila reports that CG8231 is a close match (9e-53) to human gene CCT5;CCTE;KIAA0098 (NP_036205), a gene associated with Neuropathy, hereditary sensory, with spastic paraplegia, 256840 (3).
VDRC has 2 RNAi stocks for FBgn0027329 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain250 24 of 4 0.30Down
Head276 94 of 4 0.30Down
Eye205 114 of 4 0.25Down
Thoracicoabdominal ganglion383 114 of 4 0.50Down
Salivary gland222 64 of 4 0.28Down
Crop553 114 of 4 0.70Down
Midgut415 204 of 4 0.50Down
Tubule374 204 of 4 0.50Down
Hindgut482 114 of 4 0.60Down
Heart271 74 of 4 0.34Down
Fat body252 164 of 4 0.31Down
Ovary1332 184 of 4 1.70Up
Testis187 94 of 4 0.20Down
Male accessory glands512 174 of 4 0.60Down
Virgin spermatheca185 114 of 4 0.23Down
Mated spermatheca229 124 of 4 0.28Down
Adult carcass249 124 of 4 0.30Down
Larval CNS1019 184 of 4 1.26Up
Larval Salivary gland692 304 of 4 0.86Down
Larval midgut324 194 of 4 0.40Down
Larval tubule305 54 of 4 0.40Down
Larval hindgut889 564 of 4 1.10None
Larval fat body188 164 of 4 0.20Down
Larval trachea1050 1414 of 4 1.30Up
Larval carcass868 1034 of 4 1.08None
S2 cells (growing)1426 184 of 4 1.77Up
Whole fly805 194 of 4

Looking for FBgn0027329. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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