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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027334 through 18771 annotations produced 1 hits



lethal (1) G0004 (l(1)G0004):

Annotation Number : CG11738
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027334
Gbrowse : chrX:20262477-20263428 (+) // 100.0 //
Probeset : 1623306_at
Accessions : protein= NP_608387;, nucleotide= NM_134543;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structur
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from sequence or s
FlyMine data for FBgn0027334.
BioGrid reports that CG11738 interacts with CG15015 CG1455 CG2972 CG3052 CG7185 CG9842 .
VDRC has 3 RNAi stocks for FBgn0027334 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 34 of 4 0.50Down
Head109 ± 44 of 4 0.70Down
Eye121 ± 74 of 4 0.79Down
Thoracicoabdominal ganglion78 ± 24 of 4 0.50Down
Salivary gland96 ± 44 of 4 0.63Down
Crop117 ± 44 of 4 0.80Down
Midgut106 ± 104 of 4 0.70Down
Tubule96 ± 64 of 4 0.60Down
Hindgut106 ± 54 of 4 0.70Down
Heart111 ± 104 of 4 0.72Down
Fat body144 ± 124 of 4 0.94None
Ovary216 ± 44 of 4 1.40Up
Testis24 ± 04 of 4 0.20Down
Male accessory glands240 ± 114 of 4 1.60Up
Virgin spermatheca120 ± 84 of 4 0.78Down
Mated spermatheca151 ± 84 of 4 0.98None
Adult carcass127 ± 94 of 4 0.80None
Larval CNS161 ± 64 of 4 1.05None
Larval Salivary gland135 ± 114 of 4 0.88None
Larval midgut68 ± 54 of 4 0.45Down
Larval tubule85 ± 14 of 4 0.60Down
Larval hindgut106 ± 84 of 4 0.70Down
Larval fat body58 ± 34 of 4 0.40Down
Larval trachea168 ± 154 of 4 1.10None
Larval carcass130 ± 234 of 4 0.85None
S2 cells (growing)153 ± 24 of 4 1.00None
Whole fly153 ± 94 of 4

Looking for FBgn0027334. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime