FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0027339 through 18771 annotations produced 2 hits

jim (jim):

Annotation Number : CG11352
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027339
Gbrowse : chr3L:22789075-22826488 (-) // 100.0 //
Probeset : 1636080_a_at
Accessions : protein= NP_001014601; /// NP_651956; /// NP_730746;, nucleotide= NM_001014601; /// NM_143699; /// NM_168964;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0027339.
Homophila reports that CG11352 is a close match (1e-11) to human gene SIP1;SMADIP1;ZEB2;ZFHX1B (NP_055610), a gene associated with Mowat-Wilson syndrome, 235730 (3).
BioGrid reports that CG11352 interacts with CG32096 .
TRiP has 1 RNAi stocks for FBgn0027339 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027339 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	211 ± 17	4 of 4	2.20	Up
Head	151 ± 8	4 of 4	1.60	Up
Eye	140 ± 10	4 of 4	1.49	Up
Thoracicoabdominal ganglion	161 ± 19	4 of 4	1.70	Up
Salivary gland	147 ± 11	4 of 4	1.57	Up
Crop	298 ± 11	4 of 4	3.20	Up
Midgut	170 ± 8	4 of 4	1.80	Up
Tubule	270 ± 28	4 of 4	2.90	Up
Hindgut	204 ± 6	4 of 4	2.20	Up
Heart	154 ± 7	4 of 4	1.63	Up
Fat body	181 ± 4	4 of 4	1.93	Up
Ovary	58 ± 4	4 of 4	0.60	Down
Testis	30 ± 0	4 of 4	0.30	Down
Male accessory glands	181 ± 11	4 of 4	1.90	Up
Virgin spermatheca	249 ± 17	4 of 4	2.64	Up
Mated spermatheca	261 ± 11	4 of 4	2.77	Up
Adult carcass	171 ± 8	4 of 4	1.80	Up
Larval CNS	242 ± 12	4 of 4	2.57	Up
Larval Salivary gland	570 ± 32	4 of 4	6.05	Up
Larval midgut	171 ± 19	4 of 4	1.82	Up
Larval tubule	151 ± 5	4 of 4	1.60	Up
Larval hindgut	245 ± 10	4 of 4	2.60	Up
Larval fat body	378 ± 28	4 of 4	4.00	Up
Larval trachea	818 ± 76	4 of 4	8.69	Up
Larval carcass	366 ± 23	4 of 4	3.89	Up
S2 cells (growing)	392 ± 11	4 of 4	4.17	Up
Whole fly	94 ± 7	4 of 4

jim (jim):

Annotation Number : CG11352
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027339
Gbrowse : chr3L:22789076-22826488 (-) // 100.0 //
Probeset : 1636911_at
Accessions : protein= NP_001014601; /// NP_651956; /// NP_730746;, nucleotide= NM_001014601; /// NM_143699; /// NM_168964;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0027339.
Homophila reports that CG11352 is a close match (1e-11) to human gene SIP1;SMADIP1;ZEB2;ZFHX1B (NP_055610), a gene associated with Mowat-Wilson syndrome, 235730 (3).
BioGrid reports that CG11352 interacts with CG32096 .
TRiP has 1 RNAi stocks for FBgn0027339 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027339 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	142 ± 11	4 of 4	2.80	Up
Head	88 ± 7	4 of 4	1.70	Up
Eye	56 ± 2	4 of 4	1.11	None
Thoracicoabdominal ganglion	102 ± 11	4 of 4	2.00	Up
Salivary gland	98 ± 7	4 of 4	1.93	Up
Crop	169 ± 6	4 of 4	3.30	Up
Midgut	95 ± 7	4 of 4	1.90	Up
Tubule	219 ± 20	4 of 4	4.30	Up
Hindgut	126 ± 3	4 of 4	2.50	Up
Heart	60 ± 3	4 of 4	1.19	None
Fat body	129 ± 3	4 of 4	2.54	Up
Ovary	31 ± 0	4 of 4	0.60	Down
Testis	15 ± 1	4 of 4	0.30	Down
Male accessory glands	63 ± 3	4 of 4	1.20	Up
Virgin spermatheca	108 ± 7	4 of 4	2.14	Up
Mated spermatheca	115 ± 7	4 of 4	2.26	Up
Adult carcass	106 ± 6	4 of 4	2.10	Up
Larval CNS	166 ± 15	4 of 4	3.27	Up
Larval Salivary gland	263 ± 9	4 of 4	5.17	Up
Larval midgut	108 ± 11	4 of 4	2.12	Up
Larval tubule	95 ± 5	4 of 4	1.90	Up
Larval hindgut	196 ± 8	4 of 4	3.86	Up
Larval fat body	182 ± 14	4 of 4	3.60	Up
Larval trachea	237 ± 19	4 of 4	4.66	Up
Larval carcass	167 ± 11	4 of 4	3.29	Up
S2 cells (growing)	193 ± 5	4 of 4	3.79	Up
Whole fly	50 ± 2	4 of 4

Looking for FBgn0027339. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720