FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0027341 through 18771 annotations produced 2 hits

Gfat1 ():

Annotation Number : AF541948
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 3354921
Gbrowse : Glutamine:fructose-6-phosphate aminotransferase 1
Probeset : 1635696_s_at
Accessions : protein= NM_001015157; /// NM_001015158; /// NM_001015159; /// NM_001015160; /// NM_001015161; /// NM_001015162; /// NM_001110994; /// NM_001110995; /// NM_001110996;, nucleotide= FBgn0027341
Pathway : 0004360 // glutamine-fructose-6-phosphate transaminase (isomerizing) activity // inferred from sequence or structural si
FlyMine data for 3354921.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	80 ± 4	4 of 4	7.40	Up
Head	38 ± 6	4 of 4	3.60	Up
Eye	32 ± 5	4 of 4	3.01	Up
Thoracicoabdominal ganglion	64 ± 6	4 of 4	5.90	Up
Salivary gland	103 ± 12	4 of 4	9.44	Up
Crop	54 ± 11	4 of 4	5.00	Up
Midgut	11 ± 1	3 of 4	1.10	None
Tubule	13 ± 1	2 of 4	1.20	None
Hindgut	46 ± 3	4 of 4	4.30	Up
Heart	10 ± 0	4 of 4	0.97	None
Fat body	115 ± 17	4 of 4	10.56	Up
Ovary	6 ± 1	3 of 4	0.60	None
Testis	121 ± 3	4 of 4	11.10	Up
Male accessory glands	70 ± 11	4 of 4	6.40	Up
Virgin spermatheca	58 ± 4	4 of 4	5.34	Up
Mated spermatheca	82 ± 17	4 of 4	7.50	Up
Adult carcass	31 ± 4	4 of 4	2.90	Up
Larval CNS	79 ± 21	4 of 4	7.30	Up
Larval Salivary gland	23 ± 2	4 of 4	2.18	Up
Larval midgut	13 ± 2	3 of 4	1.24	None
Larval tubule	20 ± 1	4 of 4	1.90	Up
Larval hindgut	22 ± 4	4 of 4	2.07	None
Larval fat body	17 ± 3	4 of 4	1.60	None
Larval trachea	18 ± 4	4 of 4	1.65	None
Larval carcass	14 ± 1	4 of 4	1.34	None
S2 cells (growing)	26 ± 2	4 of 4	2.41	Up
Whole fly	10 ± 1	2 of 4

Glutamine:fructose-6-phosphate aminotransferase 1 (Gfat1):

Annotation Number : CG12449
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027341
Gbrowse : chr3RHet:2474288-2481648 (+) // 100.0 //
Probeset : 1634707_s_at
Accessions : protein= NP_001015157; /// NP_001015158; /// NP_001015159; /// NP_001015160; /// NP_001015161; /// NP_001015162; /// NP_001104464; /// NP_001104465; /// NP_001104466;, nucleotide= NM_001015157; /// NM_001015158; /// NM_001015159; /// NM_001015160; /// NM_001015161; /// NM_001015162; /// NM_001110994; /// NM_001110995; /// NM_001110996;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004360 // glutamine-fructose-6-phosphate transaminase (isomerizing) activity // inferred from sequence or structural si
FlyMine data for FBgn0027341.
VDRC has 2 RNAi stocks for FBgn0027341 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	33 ± 2	4 of 4	0.20	Down
Head	354 ± 23	4 of 4	2.40	Up
Eye	160 ± 4	4 of 4	1.11	None
Thoracicoabdominal ganglion	57 ± 4	4 of 4	0.40	Down
Salivary gland	2291 ± 84	4 of 4	15.78	Up
Crop	404 ± 25	4 of 4	2.80	Up
Midgut	495 ± 23	4 of 4	3.40	Up
Tubule	38 ± 6	4 of 4	0.30	Down
Hindgut	333 ± 19	4 of 4	2.30	Up
Heart	18 ± 2	4 of 4	0.12	Down
Fat body	21 ± 10	3 of 4	0.14	Down
Ovary	7 ± 0	3 of 4	0.10	Down
Testis	25 ± 2	4 of 4	0.20	Down
Male accessory glands	887 ± 27	4 of 4	6.10	Up
Virgin spermatheca	1053 ± 34	4 of 4	7.25	Up
Mated spermatheca	1057 ± 110	4 of 4	7.28	Up
Adult carcass	407 ± 13	4 of 4	2.80	Up
Larval CNS	30 ± 4	4 of 4	0.21	Down
Larval Salivary gland	1696 ± 82	4 of 4	11.68	Up
Larval midgut	107 ± 3	4 of 4	0.74	None
Larval tubule	66 ± 4	4 of 4	0.50	Down
Larval hindgut	589 ± 10	4 of 4	4.06	Up
Larval fat body	12 ± 2	2 of 4	0.10	Down
Larval trachea	1905 ± 124	4 of 4	13.12	Up
Larval carcass	3266 ± 240	4 of 4	22.49	Up
S2 cells (growing)	9 ± 1	3 of 4	0.07	Down
Whole fly	145 ± 13	4 of 4

Looking for FBgn0027341. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720