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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027342 through 18771 annotations produced 1 hits



frizzled 4 (fz4):

Annotation Number : CG4626
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027342
Gbrowse : chrX:7000304-7004325 (-) // 100.0 //
Probeset : 1631777_a_at
Accessions : protein= NP_511068; /// NP_727170;, nucleotide= NM_078513; /// NM_167119;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0027342.
Homophila reports that CG4626 is a close match (7e-12) to human gene SMO;SMOH (NP_005622), a gene associated with Basal cell carcinoma, somatic (3).
VDRC has 2 RNAi stocks for FBgn0027342 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 04 of 4 0.30Down
Head41 14 of 4 0.30Down
Eye64 54 of 4 0.49Down
Thoracicoabdominal ganglion46 14 of 4 0.40Down
Salivary gland120 44 of 4 0.92None
Crop83 24 of 4 0.60Down
Midgut121 44 of 4 0.90None
Tubule94 74 of 4 0.70Down
Hindgut77 14 of 4 0.60Down
Heart50 34 of 4 0.38Down
Fat body52 34 of 4 0.40Down
Ovary383 54 of 4 2.90Up
Testis32 04 of 4 0.20Down
Male accessory glands126 84 of 4 1.00None
Virgin spermatheca63 44 of 4 0.48Down
Mated spermatheca92 114 of 4 0.71None
Adult carcass38 34 of 4 0.30Down
Larval CNS93 74 of 4 0.71None
Larval Salivary gland142 34 of 4 1.09None
Larval midgut210 164 of 4 1.61Up
Larval tubule134 24 of 4 1.00None
Larval hindgut116 74 of 4 0.89None
Larval fat body33 44 of 4 0.30Down
Larval trachea115 54 of 4 0.88None
Larval carcass144 84 of 4 1.10None
S2 cells (growing)129 44 of 4 0.99None
Whole fly131 144 of 4

Looking for FBgn0027342. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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