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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027343 through 18771 annotations produced 1 hits



frizzled 3 (fz3):

Annotation Number : CG16785
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027343
Gbrowse : chrX:664060-677344 (+) // 100.0 //
Probeset : 1626702_at
Accessions : protein= NP_001096859; /// NP_525035;, nucleotide= NM_001103389; /// NM_080296;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0027343.
Homophila reports that CG16785 is a close match (9e-13) to human gene FRZB;FRZB1;SRFP3 (NP_001454), a gene associated with {Osteoarthritis of hip, female-specific, susceptibility to}, 165720 (3).
BioGrid reports that CG16785 interacts with CG4889 CG6127 .
VDRC has 2 RNAi stocks for FBgn0027343 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 13 of 4 0.40Down
Head44 34 of 4 1.00None
Eye43 34 of 4 0.99None
Thoracicoabdominal ganglion15 23 of 4 0.40Down
Salivary gland38 63 of 4 0.87None
Crop78 74 of 4 1.80Up
Midgut102 64 of 4 2.30Up
Tubule66 74 of 4 1.50Up
Hindgut126 64 of 4 2.90Up
Heart119 74 of 4 2.72Up
Fat body29 64 of 4 0.67None
Ovary70 14 of 4 1.60Up
Testis21 23 of 4 0.50Down
Male accessory glands498 234 of 411.30Up
Virgin spermatheca22 34 of 4 0.51Down
Mated spermatheca20 24 of 4 0.45Down
Adult carcass36 44 of 4 0.80None
Larval CNS30 34 of 4 0.70None
Larval Salivary gland27 24 of 4 0.62Down
Larval midgut129 84 of 4 2.94Up
Larval tubule82 44 of 4 1.90Up
Larval hindgut207 114 of 4 4.72Up
Larval fat body6 10 of 4 0.10Down
Larval trachea44 24 of 4 1.01None
Larval carcass44 24 of 4 1.01None
S2 cells (growing)12 11 of 4 0.29Down
Whole fly44 54 of 4

Looking for FBgn0027343. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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