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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027358 through 18771 annotations produced 2 hits



/// Tim9b (CG12788 /// Tim9b):

Annotation Number : CG33066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027358 /// FBgn0031041
Gbrowse : chrX:19510695-19512562 (-) // 100.0 //
Probeset : 1638837_a_at
Accessions : protein= NP_001027074; /// NP_001027075; /// NP_608329;, nucleotide= NM_001031903; /// NM_001031904; /// NM_134485;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
Interpro : 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from sequence or structural
FlyMine data for FBgn0027358 /// FBgn0031041.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 24 of 4 0.70Down
Head29 24 of 4 0.50Down
Eye27 14 of 4 0.49Down
Thoracicoabdominal ganglion67 24 of 4 1.20Up
Salivary gland69 74 of 4 1.23None
Crop36 34 of 4 0.70Down
Midgut54 44 of 4 1.00None
Tubule62 74 of 4 1.10None
Hindgut45 24 of 4 0.80Down
Heart34 24 of 4 0.61Down
Fat body51 74 of 4 0.91None
Ovary104 74 of 4 1.90Up
Testis140 164 of 4 2.50Up
Male accessory glands58 34 of 4 1.00None
Virgin spermatheca29 24 of 4 0.53Down
Mated spermatheca41 34 of 4 0.74Down
Adult carcass36 24 of 4 0.60Down
Larval CNS67 94 of 4 1.19None
Larval Salivary gland46 34 of 4 0.83None
Larval midgut42 34 of 4 0.75Down
Larval tubule41 34 of 4 0.70Down
Larval hindgut61 84 of 4 1.09None
Larval fat body38 04 of 4 0.70Down
Larval trachea40 64 of 4 0.73Down
Larval carcass45 64 of 4 0.81None
S2 cells (growing)41 34 of 4 0.73Down
Whole fly56 24 of 4



/// Tim9b (CG12788 /// Tim9b):

Annotation Number : CG33066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027358 /// FBgn0031041
Gbrowse : chrX:19511919-19512562 (-) // 100.0 //
Probeset : 1636271_a_at
Accessions : protein= NP_001027074; /// NP_001027075; /// NP_608329;, nucleotide= NM_001031903; /// NM_001031904; /// NM_134485;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
Interpro : 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from sequence or structural
FlyMine data for FBgn0027358 /// FBgn0031041.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 34 of 4 1.10None
Head22 24 of 4 0.60Down
Eye41 24 of 4 1.06None
Thoracicoabdominal ganglion54 24 of 4 1.40Up
Salivary gland41 64 of 4 1.06None
Crop31 44 of 4 0.80None
Midgut31 24 of 4 0.80None
Tubule29 24 of 4 0.70Down
Hindgut31 24 of 4 0.80None
Heart44 34 of 4 1.12None
Fat body42 54 of 4 1.09None
Ovary81 24 of 4 2.10Up
Testis134 34 of 4 3.40Up
Male accessory glands62 34 of 4 1.60Up
Virgin spermatheca16 14 of 4 0.43Down
Mated spermatheca19 14 of 4 0.51Down
Adult carcass28 33 of 4 0.70Down
Larval CNS47 74 of 4 1.22None
Larval Salivary gland45 24 of 4 1.16None
Larval midgut35 14 of 4 0.90None
Larval tubule33 54 of 4 0.90None
Larval hindgut39 14 of 4 1.01None
Larval fat body35 44 of 4 0.90None
Larval trachea57 24 of 4 1.47Up
Larval carcass30 54 of 4 0.76None
S2 cells (growing)41 24 of 4 1.05None
Whole fly39 14 of 4

Looking for FBgn0027358. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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