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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027360 through 18771 annotations produced 1 hits



/// Tim10 (CG42497 /// Tim10):

Annotation Number : CG9878
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027360 /// FBgn0260223
Gbrowse : chr2R:17577712-17578614 (-) // 100.0 //
Probeset : 1637509_s_at
Accessions : protein= NP_001163242; /// NP_611606; /// NP_726104;, nucleotide= NM_001169771; /// NM_137762; /// NM_166474;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred
FlyMine data for FBgn0027360 /// FBgn0260223.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain704 ± 94 of 4 0.90Down
Head737 ± 244 of 4 0.90None
Eye734 ± 174 of 4 0.94None
Thoracicoabdominal ganglion730 ± 244 of 4 0.90None
Salivary gland917 ± 334 of 4 1.17Up
Crop780 ± 154 of 4 1.00None
Midgut745 ± 134 of 4 1.00None
Tubule1528 ± 344 of 4 2.00Up
Hindgut1057 ± 284 of 4 1.40Up
Heart746 ± 254 of 4 0.96None
Fat body859 ± 804 of 4 1.10None
Ovary1091 ± 104 of 4 1.40Up
Testis1142 ± 454 of 4 1.50Up
Male accessory glands764 ± 424 of 4 1.00None
Virgin spermatheca710 ± 354 of 4 0.91None
Mated spermatheca743 ± 204 of 4 0.95None
Adult carcass576 ± 184 of 4 0.70Down
Larval CNS716 ± 344 of 4 0.92None
Larval Salivary gland738 ± 494 of 4 0.95None
Larval midgut583 ± 344 of 4 0.75Down
Larval tubule613 ± 144 of 4 0.80Down
Larval hindgut814 ± 364 of 4 1.04None
Larval fat body490 ± 264 of 4 0.60Down
Larval trachea664 ± 524 of 4 0.85Down
Larval carcass592 ± 774 of 4 0.76None
S2 cells (growing)842 ± 74 of 4 1.08None
Whole fly780 ± 244 of 4

Looking for FBgn0027360. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime