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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0027363 through 18771 annotations produced 1 hits

Signal transducing adaptor molecule (Stam):

Annotation Number : CG6521
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027363
Gbrowse : chr2L:10858527-10862015 (+) // 100.0 //
Probeset : 1635260_at
Accessions : protein= NP_477448;, nucleotide= NM_058100;
Pathway : open tracheal system // inferred from mutant phenotype /// 0046425 // regulation of JAK-STAT cascade // traceable autho
FlyMine data for FBgn0027363.
BDGP gene expression has embryonic in situ data for Stam: 13 pix of staining in 7 body parts.
BioGrid reports that CG6521 interacts with CG9938 .
TRiP has 2 RNAi stocks for FBgn0027363 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027363 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain262 74 of 4 1.40Up
Head259 144 of 4 1.40Up
Eye362 134 of 4 1.91Up
Thoracicoabdominal ganglion247 94 of 4 1.30Up
Salivary gland310 164 of 4 1.63Up
Crop289 174 of 4 1.50Up
Midgut400 174 of 4 2.10Up
Tubule253 84 of 4 1.30Up
Hindgut252 74 of 4 1.30Up
Heart251 144 of 4 1.33Up
Fat body428 654 of 4 2.26Up
Ovary292 94 of 4 1.50Up
Testis227 124 of 4 1.20None
Male accessory glands216 114 of 4 1.10None
Virgin spermatheca544 374 of 4 2.87Up
Mated spermatheca348 324 of 4 1.83Up
Adult carcass228 94 of 4 1.20Up
Larval CNS376 444 of 4 1.99Up
Larval Salivary gland377 284 of 4 1.99Up
Larval midgut756 844 of 4 3.99Up
Larval tubule1297 674 of 4 6.80Up
Larval hindgut635 534 of 4 3.35Up
Larval fat body865 814 of 4 4.60Up
Larval trachea222 64 of 4 1.17Up
Larval carcass334 554 of 4 1.76None
S2 cells (growing)545 34 of 4 2.88Up
Whole fly189 84 of 4

Looking for FBgn0027363. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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