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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027375 through 18771 annotations produced 1 hits



Drosophila homolog of RecQ (RecQ5):

Annotation Number : CG4879
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027375
Gbrowse : chr3L:14621268-14625173 (-) // 100.0 //
Probeset : 1628264_a_at
Accessions : protein= NP_001014584; /// NP_524070; /// NP_729983;, nucleotide= NM_001014584; /// NM_079346; /// NM_168591;
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // inferred
FlyMine data for FBgn0027375.
Homophila reports that CG4879 is a close match (3e-37) to human gene RECQ4;RECQL4;RTS (NP_004251), a gene associated with Baller-Gerold syndrome, 218600 (3);RAPADILINO syndrome, 266280 (3);Rothmund-Thomson syndrome, 268400 (3).
TRiP has 1 RNAi stocks for FBgn0027375 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027375 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain105 34 of 4 0.90Down
Head87 84 of 4 0.70Down
Eye72 44 of 4 0.59Down
Thoracicoabdominal ganglion76 24 of 4 0.60Down
Salivary gland68 64 of 4 0.55Down
Crop70 54 of 4 0.60Down
Midgut44 34 of 4 0.40Down
Tubule65 34 of 4 0.50Down
Hindgut43 24 of 4 0.40Down
Heart94 44 of 4 0.77Down
Fat body121 164 of 4 0.99None
Ovary311 104 of 4 2.50Up
Testis28 34 of 4 0.20Down
Male accessory glands162 64 of 4 1.30Up
Virgin spermatheca139 74 of 4 1.14None
Mated spermatheca116 84 of 4 0.95None
Adult carcass76 64 of 4 0.60Down
Larval CNS155 144 of 4 1.26Up
Larval Salivary gland62 44 of 4 0.51Down
Larval midgut40 24 of 4 0.33Down
Larval tubule60 14 of 4 0.50Down
Larval hindgut57 14 of 4 0.47Down
Larval fat body38 24 of 4 0.30Down
Larval trachea123 174 of 4 1.01None
Larval carcass56 34 of 4 0.46Down
S2 cells (growing)78 44 of 4 0.64Down
Whole fly122 44 of 4

Looking for FBgn0027375. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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