FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0027378 through 18771 annotations produced 1 hits

MRG15 (MRG15):

Annotation Number : CG6363
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027378
Gbrowse : chr3R:11102161-11103831 (-) // 100.0 //
Probeset : 1626620_at
Accessions : protein= NP_650442;, nucleotide= NM_142185;
Pathway : 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotatio
Interpro : 0003682 // chromatin binding // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity //
FlyMine data for FBgn0027378.
BDGP gene expression has embryonic in situ data for MRG15: 11 pix of staining in 7 body parts.
BioGrid reports that CG6363 interacts with CG7109 CG7323 .
TRiP has 2 RNAi stocks for FBgn0027378 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027378 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	133 ± 2	4 of 4	0.90	Down
Head	99 ± 5	4 of 4	0.70	Down
Eye	103 ± 3	4 of 4	0.70	Down
Thoracicoabdominal ganglion	106 ± 2	4 of 4	0.70	Down
Salivary gland	97 ± 7	4 of 4	0.65	Down
Crop	113 ± 2	4 of 4	0.80	Down
Midgut	99 ± 2	4 of 4	0.70	Down
Tubule	104 ± 4	4 of 4	0.70	Down
Hindgut	109 ± 3	4 of 4	0.70	Down
Heart	91 ± 2	4 of 4	0.62	Down
Fat body	93 ± 8	4 of 4	0.63	Down
Ovary	238 ± 6	4 of 4	1.60	Up
Testis	42 ± 1	4 of 4	0.30	Down
Male accessory glands	128 ± 1	4 of 4	0.90	Down
Virgin spermatheca	112 ± 5	4 of 4	0.75	Down
Mated spermatheca	135 ± 5	4 of 4	0.91	None
Adult carcass	114 ± 6	4 of 4	0.80	Down
Larval CNS	223 ± 7	4 of 4	1.50	Up
Larval Salivary gland	163 ± 6	4 of 4	1.10	None
Larval midgut	87 ± 4	4 of 4	0.58	Down
Larval tubule	116 ± 3	4 of 4	0.80	Down
Larval hindgut	115 ± 2	4 of 4	0.77	Down
Larval fat body	110 ± 6	4 of 4	0.70	Down
Larval trachea	173 ± 8	4 of 4	1.16	Up
Larval carcass	139 ± 2	4 of 4	0.93	None
S2 cells (growing)	170 ± 7	4 of 4	1.14	None
Whole fly	149 ± 4	4 of 4

Looking for FBgn0027378. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720