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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027490 through 18771 annotations produced 1 hits



D12 (D12):

Annotation Number : CG13400
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027490
Gbrowse : chr2L:8434057-8437346 (-) // 100.0 //
Probeset : 1632998_at
Accessions : protein= NP_609228;, nucleotide= NM_135384;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0027490.
BioGrid reports that CG13400 interacts with CG31756 CG4568 CG6378 .
VDRC has 3 RNAi stocks for FBgn0027490 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 34 of 4 0.90None
Head28 24 of 4 0.40Down
Eye22 24 of 4 0.35Down
Thoracicoabdominal ganglion41 24 of 4 0.60Down
Salivary gland24 42 of 4 0.38Down
Crop24 14 of 4 0.40Down
Midgut20 20 of 4 0.30Down
Tubule21 04 of 4 0.30Down
Hindgut17 23 of 4 0.30Down
Heart14 13 of 4 0.22Down
Fat body23 41 of 4 0.36Down
Ovary165 24 of 4 2.50Up
Testis15 14 of 4 0.20Down
Male accessory glands21 43 of 4 0.30Down
Virgin spermatheca30 34 of 4 0.47Down
Mated spermatheca34 24 of 4 0.52Down
Adult carcass33 23 of 4 0.50Down
Larval CNS109 124 of 4 1.67Up
Larval Salivary gland35 34 of 4 0.55Down
Larval midgut21 30 of 4 0.33Down
Larval tubule13 14 of 4 0.20Down
Larval hindgut17 14 of 4 0.27Down
Larval fat body19 33 of 4 0.30Down
Larval trachea33 64 of 4 0.52Down
Larval carcass22 14 of 4 0.34Down
S2 cells (growing)68 24 of 4 1.05None
Whole fly65 34 of 4

Looking for FBgn0027490. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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