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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027491 through 18771 annotations produced 1 hits



chr2L:10308123-10310736 (-) // 100.0 // (Cdk5 activator-like protein):

Annotation Number : CG5387
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636914_at
Accessions : protein= , nucleotide= NP_523535;
Pathway : 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inf
Interpro : 0016533 // cyclin-dependent protein kinase 5 holoenzyme complex // inferred from physical interaction /// 0016533 // cyc
FlyMine data for full length.
BioGrid reports that CG5387 interacts with CG8203 CG8203 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1371 ± 304 of 424.00Up
Head620 ± 424 of 410.90Up
Eye1086 ± 404 of 419.02Up
Thoracicoabdominal ganglion1224 ± 224 of 421.40Up
Salivary gland2 ± 00 of 4 0.04Down
Crop4 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.10Down
Heart7 ± 22 of 4 0.12Down
Fat body9 ± 21 of 4 0.16Down
Ovary0 ± 00 of 4 0.00Down
Testis81 ± 24 of 4 1.40Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca15 ± 14 of 4 0.26Down
Mated spermatheca8 ± 00 of 4 0.15Down
Adult carcass23 ± 53 of 4 0.40Down
Larval CNS726 ± 334 of 412.73Up
Larval Salivary gland1 ± 10 of 4 0.03Down
Larval midgut2 ± 00 of 4 0.04Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.04Down
Larval fat body13 ± 61 of 4 0.20Down
Larval trachea14 ± 231 of 4 0.26Down
Larval carcass10 ± 02 of 4 0.18Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly57 ± 14 of 4

Looking for FBgn0027491. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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