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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027493 through 18771 annotations produced 1 hits



(CG17273):

Annotation Number : CG17273
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027493
Gbrowse : chr3R:16650377-16656337 (-) // 100.0 //
Probeset : 1640454_at
Accessions : protein= NP_650918;, nucleotide= NM_142661;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred fr
FlyMine data for FBgn0027493.
BioGrid reports that CG17273 interacts with CG32451 CG4165 CG6905 CG7146 .
TRiP has 1 RNAi stocks for FBgn0027493 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027493 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain497 134 of 4 0.60Down
Head639 214 of 4 0.80Down
Eye396 164 of 4 0.49Down
Thoracicoabdominal ganglion563 104 of 4 0.70Down
Salivary gland3688 624 of 4 4.57Up
Crop2448 1424 of 4 3.00Up
Midgut1388 634 of 4 1.70Up
Tubule4149 1354 of 4 5.10Up
Hindgut1909 674 of 4 2.40Up
Heart1503 724 of 4 1.86Up
Fat body778 694 of 4 0.97None
Ovary817 164 of 4 1.00None
Testis155 74 of 4 0.20Down
Male accessory glands995 594 of 4 1.20Up
Virgin spermatheca706 194 of 4 0.88None
Mated spermatheca588 524 of 4 0.73Down
Adult carcass843 404 of 4 1.00None
Larval CNS697 544 of 4 0.87None
Larval Salivary gland1195 1054 of 4 1.48Up
Larval midgut1131 474 of 4 1.40Up
Larval tubule1370 354 of 4 1.70Up
Larval hindgut1497 694 of 4 1.86Up
Larval fat body103 124 of 4 0.10Down
Larval trachea833 634 of 4 1.03None
Larval carcass1691 1444 of 4 2.10Up
S2 cells (growing)877 24 of 4 1.09None
Whole fly806 404 of 4

Looking for FBgn0027493. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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