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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027494 through 18771 annotations produced 1 hits



Ribosomal protein S10a (RpS10a):

Annotation Number : CG12275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027494
Gbrowse : chr3R:23478557-23479089 (+) // 100.0 //
Probeset : 1637941_at
Accessions : protein= NP_651576;, nucleotide= NM_143319;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0027494.
Homophila reports that CG12275 is a close match (1e-25) to human gene EBS1;PLEC1;PLTN (NP_958782), a gene associated with Epidermolysis bullosa simplex with pyloric atresia, 612138 (3);Epidermolysis bullosa simplex, Ogna type, 131950 (3);Muscular dystrophy with epidermolysis bullosa simplex, 226670 (3).
TRiP has 1 RNAi stocks for FBgn0027494 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027494 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head2 00 of 4 0.10Down
Eye9 11 of 4 0.35Down
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland9 20 of 4 0.35Down
Crop4 10 of 4 0.20Down
Midgut2 00 of 4 0.10Down
Tubule6 00 of 4 0.20Down
Hindgut2 00 of 4 0.10Down
Heart4 10 of 4 0.16Down
Fat body3 30 of 4 0.15Down
Ovary11 22 of 4 0.40Down
Testis188 64 of 4 7.20Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.09Down
Mated spermatheca2 00 of 4 0.08Down
Adult carcass7 20 of 4 0.30Down
Larval CNS4 10 of 4 0.16Down
Larval Salivary gland4 10 of 4 0.16Down
Larval midgut4 10 of 4 0.17Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut2 00 of 4 0.08Down
Larval fat body42 93 of 4 1.60None
Larval trachea2 20 of 4 0.10Down
Larval carcass4 20 of 4 0.19Down
S2 cells (growing)2 00 of 4 0.11Down
Whole fly26 34 of 4

Looking for FBgn0027494. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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