Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027506 through 18771 annotations produced 1 hits



Egg-derived tyrosine phosphatase (EDTP):

Annotation Number : CG6542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027506
Gbrowse : chr2R:13319614-13332443 (-) // 100.0 //
Probeset : 1638875_at
Accessions : protein= NP_523770; /// NP_995873;, nucleotide= NM_079046; /// NM_206151;
Interpro : 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine
FlyMine data for FBgn0027506.
BDGP gene expression has embryonic in situ data for EDTP: 4 pix of staining in 1 body parts.
Homophila reports that CG6542 is a close match (1e-83) to human gene C3orf29;HJUMPY;MTMR14 (NP_001070993), a gene associated with {Centronuclear myopathy, autosomal, modifier of}, 160150 (3).
BioGrid reports that CG6542 interacts with CG8415 .
TRiP has 2 RNAi stocks for FBgn0027506 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain149 ± 84 of 4 0.60Down
Head184 ± 154 of 4 0.70Down
Eye137 ± 134 of 4 0.55Down
Thoracicoabdominal ganglion155 ± 64 of 4 0.60Down
Salivary gland224 ± 104 of 4 0.89None
Crop169 ± 194 of 4 0.70Down
Midgut133 ± 64 of 4 0.50Down
Tubule144 ± 84 of 4 0.60Down
Hindgut136 ± 34 of 4 0.50Down
Heart205 ± 174 of 4 0.82None
Fat body546 ± 504 of 4 2.17Up
Ovary493 ± 84 of 4 2.00Up
Testis59 ± 54 of 4 0.20Down
Male accessory glands103 ± 54 of 4 0.40Down
Virgin spermatheca675 ± 434 of 4 2.68Up
Mated spermatheca449 ± 484 of 4 1.78Up
Adult carcass251 ± 104 of 4 1.00None
Larval CNS168 ± 34 of 4 0.67Down
Larval Salivary gland188 ± 114 of 4 0.75Down
Larval midgut133 ± 114 of 4 0.53Down
Larval tubule130 ± 74 of 4 0.50Down
Larval hindgut144 ± 104 of 4 0.57Down
Larval fat body58 ± 34 of 4 0.20Down
Larval trachea134 ± 164 of 4 0.53Down
Larval carcass201 ± 384 of 4 0.80None
S2 cells (growing)103 ± 54 of 4 0.41Down
Whole fly252 ± 124 of 4

Looking for FBgn0027506. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime