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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027507 through 18771 annotations produced 1 hits



(CG1344):

Annotation Number : CG1344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027507
Gbrowse : chr2R:1541143-1543434 (+) // 99.16 //
Probeset : 1627040_at
Accessions : protein= NP_610175;, nucleotide= NM_136331;
Interpro : 0004672 // protein kinase activity // non-traceable author statement /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0027507.
BDGP gene expression has embryonic in situ data for BcDNA:LD22679: 4 pix of staining in 1 body parts.
BioGrid reports that CG1344 interacts with CG17003 .
TRiP has 1 RNAi stocks for FBgn0027507 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027507 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 ± 14 of 4 1.10None
Head91 ± 34 of 4 0.60Down
Eye145 ± 194 of 4 0.98None
Thoracicoabdominal ganglion166 ± 94 of 4 1.10None
Salivary gland231 ± 34 of 4 1.55Up
Crop114 ± 34 of 4 0.80Down
Midgut88 ± 04 of 4 0.60Down
Tubule87 ± 24 of 4 0.60Down
Hindgut108 ± 34 of 4 0.70Down
Heart142 ± 84 of 4 0.95None
Fat body155 ± 104 of 4 1.04None
Ovary307 ± 94 of 4 2.10Up
Testis58 ± 24 of 4 0.40Down
Male accessory glands147 ± 94 of 4 1.00None
Virgin spermatheca105 ± 44 of 4 0.71Down
Mated spermatheca117 ± 64 of 4 0.79Down
Adult carcass92 ± 74 of 4 0.60Down
Larval CNS301 ± 104 of 4 2.02Up
Larval Salivary gland250 ± 54 of 4 1.68Up
Larval midgut101 ± 34 of 4 0.68Down
Larval tubule222 ± 114 of 4 1.50Up
Larval hindgut213 ± 104 of 4 1.43Up
Larval fat body186 ± 74 of 4 1.20Up
Larval trachea225 ± 244 of 4 1.51Up
Larval carcass163 ± 44 of 4 1.10None
S2 cells (growing)220 ± 64 of 4 1.48Up
Whole fly149 ± 84 of 4

Looking for FBgn0027507. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime