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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027512 through 18771 annotations produced 1 hits



(CG10254):

Annotation Number : CG10254
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027512
Gbrowse : chr3R:19514726-19520705 (-) // 100.0 //
Probeset : 1627172_s_at
Accessions : protein= NP_651170; /// NP_732888;, nucleotide= NM_142913; /// NM_170081;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0027512.
BDGP gene expression has embryonic in situ data for BcDNA:LD22087: 2 pix of staining in 1 body parts.
Homophila reports that CG10254 is a close match (6e-13) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG10254 interacts with CG13524 CG6357 CG8515 .
VDRC has 2 RNAi stocks for FBgn0027512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain408 ± 174 of 4 0.50Down
Head157 ± 24 of 4 0.20Down
Eye164 ± 74 of 4 0.19Down
Thoracicoabdominal ganglion413 ± 114 of 4 0.50Down
Salivary gland557 ± 184 of 4 0.65Down
Crop115 ± 64 of 4 0.10Down
Midgut44 ± 44 of 4 0.10Down
Tubule68 ± 124 of 4 0.10Down
Hindgut94 ± 24 of 4 0.10Down
Heart102 ± 54 of 4 0.12Down
Fat body89 ± 174 of 4 0.10Down
Ovary1620 ± 394 of 4 1.90Up
Testis1288 ± 334 of 4 1.50Up
Male accessory glands323 ± 234 of 4 0.40Down
Virgin spermatheca104 ± 74 of 4 0.12Down
Mated spermatheca128 ± 164 of 4 0.15Down
Adult carcass142 ± 164 of 4 0.20Down
Larval CNS206 ± 14 of 4 0.24Down
Larval Salivary gland641 ± 784 of 4 0.75None
Larval midgut50 ± 24 of 4 0.06Down
Larval tubule77 ± 44 of 4 0.10Down
Larval hindgut114 ± 54 of 4 0.13Down
Larval fat body252 ± 814 of 4 0.30Down
Larval trachea138 ± 244 of 4 0.16Down
Larval carcass119 ± 34 of 4 0.14Down
S2 cells (growing)131 ± 34 of 4 0.15Down
Whole fly854 ± 484 of 4

Looking for FBgn0027512. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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