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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027514 through 18771 annotations produced 1 hits



(CG1024):

Annotation Number : CG1024
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027514
Gbrowse : chr3R:2203968-2206050 (-) // 100.0 //
Probeset : 1630448_at
Accessions : protein= NP_649652;, nucleotide= NM_141395;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0027514.
TRiP has 1 RNAi stocks for FBgn0027514 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 24 of 4 0.60Down
Head16 ± 23 of 4 0.30Down
Eye20 ± 14 of 4 0.34Down
Thoracicoabdominal ganglion21 ± 04 of 4 0.40Down
Salivary gland29 ± 40 of 4 0.49Down
Crop26 ± 44 of 4 0.40Down
Midgut21 ± 23 of 4 0.30Down
Tubule31 ± 24 of 4 0.50Down
Hindgut23 ± 14 of 4 0.40Down
Heart12 ± 13 of 4 0.21Down
Fat body22 ± 23 of 4 0.37Down
Ovary218 ± 154 of 4 3.60Up
Testis41 ± 24 of 4 0.70Down
Male accessory glands27 ± 22 of 4 0.40Down
Virgin spermatheca18 ± 14 of 4 0.30Down
Mated spermatheca25 ± 14 of 4 0.42Down
Adult carcass12 ± 20 of 4 0.20Down
Larval CNS95 ± 74 of 4 1.58Up
Larval Salivary gland39 ± 24 of 4 0.66Down
Larval midgut24 ± 03 of 4 0.41Down
Larval tubule28 ± 34 of 4 0.50Down
Larval hindgut40 ± 14 of 4 0.66Down
Larval fat body30 ± 34 of 4 0.50Down
Larval trachea35 ± 44 of 4 0.59Down
Larval carcass24 ± 13 of 4 0.40Down
S2 cells (growing)57 ± 24 of 4 0.96None
Whole fly60 ± 34 of 4

Looking for FBgn0027514. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime