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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027515 through 18771 annotations produced 1 hits



(CG7115):

Annotation Number : CG7115
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027515
Gbrowse : chr2L:7821533-7825376 (+) // 100.0 //
Probeset : 1633918_s_at
Accessions : protein= NP_609154; /// NP_723320;, nucleotide= NM_135310; /// NM_164774;
Pathway : 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity
FlyMine data for FBgn0027515.
BDGP gene expression has embryonic in situ data for BcDNA:LD21794: 25 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0027515 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027515 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain226 104 of 4 0.70Down
Head242 94 of 4 0.80Down
Eye163 14 of 4 0.51Down
Thoracicoabdominal ganglion249 114 of 4 0.80Down
Salivary gland135 94 of 4 0.42Down
Crop321 24 of 4 1.00None
Midgut105 34 of 4 0.30Down
Tubule272 164 of 4 0.80Down
Hindgut213 34 of 4 0.70Down
Heart464 294 of 4 1.44Up
Fat body102 74 of 4 0.32Down
Ovary561 74 of 4 1.70Up
Testis266 74 of 4 0.80Down
Male accessory glands139 44 of 4 0.40Down
Virgin spermatheca122 84 of 4 0.38Down
Mated spermatheca135 54 of 4 0.42Down
Adult carcass440 114 of 4 1.40Up
Larval CNS209 124 of 4 0.65Down
Larval Salivary gland102 44 of 4 0.32Down
Larval midgut106 34 of 4 0.33Down
Larval tubule243 124 of 4 0.80Down
Larval hindgut208 64 of 4 0.65Down
Larval fat body278 214 of 4 0.90None
Larval trachea126 124 of 4 0.39Down
Larval carcass585 914 of 4 1.82None
S2 cells (growing)72 14 of 4 0.22Down
Whole fly322 124 of 4

Looking for FBgn0027515. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime