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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0027518 through 18771 annotations produced 1 hits


Annotation Number : CG7609
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027518
Gbrowse : chr3R:25567687-25570790 (-) // 100.0 //
Probeset : 1640643_a_at
Accessions : protein= NP_651720; /// NP_733303;, nucleotide= NM_143463; /// NM_170424;
Interpro : 0005053 // peroxisome matrix targeting signal-2 binding // inferred from sequence or structural similarity
FlyMine data for FBgn0027518.
Homophila reports that CG7609 is a close match (4e-22) to human gene PEX7;RCDP1 (NP_000279), a gene associated with Refsum disease, 266500 (3);Rhizomelic chondrodysplasia punctata, type 1, 215100 (3).
VDRC has 2 RNAi stocks for FBgn0027518 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 24 of 4 0.70Down
Head37 24 of 4 0.50Down
Eye28 14 of 4 0.36Down
Thoracicoabdominal ganglion55 44 of 4 0.70Down
Salivary gland78 83 of 4 1.00None
Crop44 24 of 4 0.60Down
Midgut49 44 of 4 0.60Down
Tubule68 34 of 4 0.90Down
Hindgut40 14 of 4 0.50Down
Heart41 24 of 4 0.53Down
Fat body60 74 of 4 0.77None
Ovary129 14 of 4 1.60Up
Testis25 14 of 4 0.30Down
Male accessory glands51 64 of 4 0.70Down
Virgin spermatheca57 64 of 4 0.73None
Mated spermatheca55 74 of 4 0.71None
Adult carcass58 83 of 4 0.70None
Larval CNS70 114 of 4 0.90None
Larval Salivary gland63 54 of 4 0.80None
Larval midgut58 54 of 4 0.75None
Larval tubule68 34 of 4 0.90None
Larval hindgut47 24 of 4 0.60Down
Larval fat body56 74 of 4 0.70None
Larval trachea55 64 of 4 0.70Down
Larval carcass60 34 of 4 0.78None
S2 cells (growing)253 94 of 4 3.23Up
Whole fly78 64 of 4

Looking for FBgn0027518. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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