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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027521 through 18771 annotations produced 1 hits



(CG3679):

Annotation Number : CG3679
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027521
Gbrowse : chrX:16197946-16200957 (+) // 100.0 //
Probeset : 1630343_at
Accessions : protein= NP_573113;, nucleotide= NM_132885;
FlyMine data for FBgn0027521.
BDGP gene expression has embryonic in situ data for BcDNA:LD21675: 4 pix of staining in 1 body parts.
BioGrid reports that CG3679 interacts with CG4617 CG9949 .
TRiP has 1 RNAi stocks for FBgn0027521 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027521 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head4 ± 11 of 4 0.00Down
Eye5 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.00Down
Salivary gland14 ± 31 of 4 0.07Down
Crop7 ± 12 of 4 0.00Down
Midgut10 ± 11 of 4 0.00Down
Tubule8 ± 21 of 4 0.00Down
Hindgut9 ± 23 of 4 0.00Down
Heart2 ± 00 of 4 0.01Down
Fat body14 ± 52 of 4 0.07Down
Ovary678 ± 74 of 4 3.30Up
Testis33 ± 04 of 4 0.20Down
Male accessory glands6 ± 21 of 4 0.00Down
Virgin spermatheca18 ± 24 of 4 0.09Down
Mated spermatheca20 ± 53 of 4 0.10Down
Adult carcass17 ± 32 of 4 0.10Down
Larval CNS127 ± 154 of 4 0.63Down
Larval Salivary gland8 ± 11 of 4 0.04Down
Larval midgut9 ± 22 of 4 0.05Down
Larval tubule5 ± 12 of 4 0.00Down
Larval hindgut13 ± 04 of 4 0.07Down
Larval fat body17 ± 53 of 4 0.10Down
Larval trachea51 ± 54 of 4 0.25Down
Larval carcass24 ± 24 of 4 0.12Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly203 ± 114 of 4

Looking for FBgn0027521. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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