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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027524 through 18771 annotations produced 1 hits



(CG3909):

Annotation Number : CG3909
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027524
Gbrowse : chr3R:5868979-5870337 (+) // 100.0 //
Probeset : 1628648_at
Accessions : protein= NP_649969;, nucleotide= NM_141712;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0027524.
BDGP gene expression has embryonic in situ data for BcDNA:LD21537: 8 pix of staining in 1 body parts.
Homophila reports that CG3909 is a close match (3e-22) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
BioGrid reports that CG3909 interacts with CG4563 .
VDRC has 2 RNAi stocks for FBgn0027524 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 34 of 4 0.70Down
Head116 ± 84 of 4 0.60Down
Eye159 ± 84 of 4 0.85None
Thoracicoabdominal ganglion151 ± 74 of 4 0.80Down
Salivary gland192 ± 34 of 4 1.02None
Crop165 ± 54 of 4 0.90None
Midgut142 ± 64 of 4 0.80Down
Tubule185 ± 64 of 4 1.00None
Hindgut130 ± 24 of 4 0.70Down
Heart120 ± 54 of 4 0.64Down
Fat body120 ± 64 of 4 0.64Down
Ovary317 ± 54 of 4 1.70Up
Testis232 ± 74 of 4 1.20Up
Male accessory glands266 ± 134 of 4 1.40Up
Virgin spermatheca154 ± 64 of 4 0.82Down
Mated spermatheca183 ± 54 of 4 0.98None
Adult carcass119 ± 64 of 4 0.60Down
Larval CNS340 ± 154 of 4 1.81Up
Larval Salivary gland362 ± 84 of 4 1.93Up
Larval midgut113 ± 24 of 4 0.60Down
Larval tubule157 ± 44 of 4 0.80None
Larval hindgut180 ± 44 of 4 0.96None
Larval fat body151 ± 34 of 4 0.80Down
Larval trachea274 ± 174 of 4 1.46Up
Larval carcass179 ± 84 of 4 0.95None
S2 cells (growing)163 ± 74 of 4 0.87None
Whole fly188 ± 104 of 4

Looking for FBgn0027524. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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