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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027526 through 18771 annotations produced 1 hits



(CG6697):

Annotation Number : CG6697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027526
Gbrowse : chr3R:18887216-18888474 (+) // 100.0 //
Probeset : 1635003_at
Accessions : protein= NP_651118;, nucleotide= NM_142861;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation
FlyMine data for FBgn0027526.
BDGP gene expression has embryonic in situ data for BcDNA:LD21504: 9 pix of staining in 3 body parts.
TRiP has 2 RNAi stocks for FBgn0027526 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027526 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain186 ± 34 of 4 0.60Down
Head135 ± 44 of 4 0.40Down
Eye98 ± 64 of 4 0.33Down
Thoracicoabdominal ganglion169 ± 34 of 4 0.60Down
Salivary gland237 ± 64 of 4 0.79Down
Crop133 ± 54 of 4 0.40Down
Midgut235 ± 44 of 4 0.80Down
Tubule227 ± 124 of 4 0.80Down
Hindgut123 ± 44 of 4 0.40Down
Heart201 ± 54 of 4 0.67Down
Fat body215 ± 204 of 4 0.72Down
Ovary493 ± 124 of 4 1.60Up
Testis374 ± 74 of 4 1.20Up
Male accessory glands283 ± 34 of 4 0.90None
Virgin spermatheca125 ± 34 of 4 0.42Down
Mated spermatheca144 ± 54 of 4 0.48Down
Adult carcass168 ± 54 of 4 0.60Down
Larval CNS288 ± 84 of 4 0.96None
Larval Salivary gland437 ± 144 of 4 1.45Up
Larval midgut217 ± 94 of 4 0.72Down
Larval tubule322 ± 94 of 4 1.10None
Larval hindgut215 ± 114 of 4 0.72Down
Larval fat body268 ± 94 of 4 0.90None
Larval trachea336 ± 84 of 4 1.12Up
Larval carcass324 ± 324 of 4 1.08None
S2 cells (growing)320 ± 74 of 4 1.07None
Whole fly300 ± 114 of 4

Looking for FBgn0027526. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime