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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027527 through 18771 annotations produced 1 hits



Osiris (Osi6):

Annotation Number : CG1151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027527
Gbrowse : chr3R:2060430-2062603 (+) // 100.0 //
Probeset : 1625382_at
Accessions : protein= NP_649625;, nucleotide= NM_141368;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0027527.
BDGP gene expression has embryonic in situ data for BcDNA:LD21503: 15 pix of staining in 7 body parts.
BioGrid reports that CG1151 interacts with CG8328 CG5450 CG7056 .
VDRC has 2 RNAi stocks for FBgn0027527 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00None
Head3 ± 10 of 4 0.00None
Eye2 ± 10 of 4 0.01None
Thoracicoabdominal ganglion2 ± 10 of 4 0.00None
Salivary gland19 ± 11 of 4 0.08None
Crop57 ± 164 of 4 0.20None
Midgut3 ± 10 of 4 0.00None
Tubule6 ± 10 of 4 0.00Down
Hindgut13 ± 72 of 4 0.10None
Heart1 ± 00 of 4 0.01None
Fat body9 ± 61 of 4 0.04None
Ovary0 ± 00 of 4 0.00None
Testis6 ± 01 of 4 0.00None
Male accessory glands7 ± 10 of 4 0.00None
Virgin spermatheca5 ± 10 of 4 0.02None
Mated spermatheca5 ± 21 of 4 0.02None
Adult carcass7 ± 20 of 4 0.00None
Larval CNS6 ± 20 of 4 0.03None
Larval Salivary gland3 ± 10 of 4 0.01None
Larval midgut4 ± 10 of 4 0.02None
Larval tubule4 ± 10 of 4 0.00None
Larval hindgut87 ± 24 of 4 0.36None
Larval fat body6 ± 00 of 4 0.00None
Larval trachea2 ± 10 of 4 0.01None
Larval carcass2 ± 10 of 4 0.01None
S2 cells (growing)1 ± 00 of 4 0.01None
Whole fly244 ± 993 of 4

Looking for FBgn0027527. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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