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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027528 through 18771 annotations produced 1 hits



(CG9634):

Annotation Number : CG9634
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027528
Gbrowse : chrX:16621335-16645943 (-) // 100.0 //
Probeset : 1626271_at
Accessions : protein= NP_573160;, nucleotide= NM_132932;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0027528.
Homophila reports that CG9634 is a close match (4e-15) to human gene HPDR1;HYP;PHEX (NP_000435), a gene associated with Hypophosphatemia, X-linked, 307800 (3).
TRiP has 1 RNAi stocks for FBgn0027528 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027528 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain105 ± 34 of 4 1.30Up
Head132 ± 34 of 4 1.60Up
Eye272 ± 54 of 4 3.28Up
Thoracicoabdominal ganglion186 ± 54 of 4 2.20Up
Salivary gland19 ± 12 of 4 0.24Down
Crop156 ± 64 of 4 1.90Up
Midgut283 ± 134 of 4 3.40Up
Tubule263 ± 204 of 4 3.20Up
Hindgut112 ± 24 of 4 1.30Up
Heart107 ± 34 of 4 1.29Up
Fat body228 ± 44 of 4 2.75Up
Ovary73 ± 24 of 4 0.90None
Testis10 ± 04 of 4 0.10Down
Male accessory glands8 ± 01 of 4 0.10Down
Virgin spermatheca254 ± 124 of 4 3.06Up
Mated spermatheca207 ± 54 of 4 2.49Up
Adult carcass121 ± 74 of 4 1.50Up
Larval CNS133 ± 54 of 4 1.61Up
Larval Salivary gland14 ± 24 of 4 0.18Down
Larval midgut189 ± 154 of 4 2.28Up
Larval tubule269 ± 124 of 4 3.20Up
Larval hindgut75 ± 44 of 4 0.91None
Larval fat body6 ± 11 of 4 0.10Down
Larval trachea234 ± 144 of 4 2.83Up
Larval carcass92 ± 74 of 4 1.11None
S2 cells (growing)3 ± 00 of 4 0.05Down
Whole fly83 ± 54 of 4

Looking for FBgn0027528. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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