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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027538 through 18771 annotations produced 1 hits



beta4GalNAcTA (beta4GalNAcTA):

Annotation Number : CG8536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027538
Gbrowse : chr2R:10146536-10148655 (+) // 99.79 //
Probeset : 1638113_at
Accessions : protein= NP_610946;, nucleotide= NM_137102;
Pathway : 0005794 // Golgi apparatus // inferred from direct assay
Interpro : "0008376 // acetylgalactosaminyltransferase activity // inferred from direct assay /// 0009045 // xylose isomerase activ
FlyMine data for FBgn0027538.
BDGP gene expression has embryonic in situ data for BcDNA:GH13356: 5 pix of staining in 3 body parts.
Homophila reports that CG8536 is a close match (3e-30) to human gene B4GALT7;XGALT1;XGPT1 (NP_009186), a gene associated with Ehlers-Danlos syndrome, progeroid form, 130070 (3).
VDRC has 3 RNAi stocks for FBgn0027538 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 34 of 4 1.50Up
Head68 34 of 4 1.00None
Eye35 34 of 4 0.50Down
Thoracicoabdominal ganglion86 34 of 4 1.20None
Salivary gland49 34 of 4 0.69Down
Crop69 54 of 4 1.00None
Midgut267 44 of 4 3.70Up
Tubule63 14 of 4 0.90Down
Hindgut79 34 of 4 1.10None
Heart248 164 of 4 3.45Up
Fat body134 144 of 4 1.86Up
Ovary173 74 of 4 2.40Up
Testis23 14 of 4 0.30Down
Male accessory glands16 23 of 4 0.20Down
Virgin spermatheca68 54 of 4 0.94None
Mated spermatheca47 24 of 4 0.66Down
Adult carcass58 94 of 4 0.80None
Larval CNS79 64 of 4 1.10None
Larval Salivary gland65 64 of 4 0.91None
Larval midgut110 104 of 4 1.53Up
Larval tubule30 24 of 4 0.40Down
Larval hindgut90 34 of 4 1.25Up
Larval fat body101 74 of 4 1.40Up
Larval trachea53 44 of 4 0.75Down
Larval carcass69 24 of 4 0.97None
S2 cells (growing)98 34 of 4 1.36Up
Whole fly72 54 of 4

Looking for FBgn0027538. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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