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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027539 through 18771 annotations produced 1 hits



(CG5807):

Annotation Number : CG5807
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027539
Gbrowse : chr3R:20631386-20639750 (-) // 100.0 //
Probeset : 1623543_at
Accessions : protein= NP_651290;, nucleotide= NM_143033;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0027539.
Homophila reports that CG5807 is a close match (1e-86) to human gene ACHP;C7orf2;LMBR1;PPD2 (NP_071903), a gene associated with Acheiropody, 200500 (3);Polydactyly, preaxial type II, 174500 (3);Syndactyly, type IV, 186200 (3);Triphalangeal thumb, type I, 174500 (3);Triphalangeal thumb-polysyndactyly syndrome, 174500 (3).
BioGrid reports that CG5807 interacts with CG6054 CG7628 .
TRiP has 1 RNAi stocks for FBgn0027539 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027539 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain177 ± 14 of 4 1.00None
Head57 ± 14 of 4 0.30Down
Eye44 ± 24 of 4 0.25Down
Thoracicoabdominal ganglion150 ± 24 of 4 0.80None
Salivary gland330 ± 74 of 4 1.86Up
Crop34 ± 14 of 4 0.20Down
Midgut155 ± 94 of 4 0.90None
Tubule62 ± 54 of 4 0.40Down
Hindgut54 ± 34 of 4 0.30Down
Heart81 ± 54 of 4 0.46Down
Fat body73 ± 134 of 4 0.41Down
Ovary458 ± 84 of 4 2.60Up
Testis203 ± 84 of 4 1.10None
Male accessory glands33 ± 24 of 4 0.20Down
Virgin spermatheca72 ± 24 of 4 0.41Down
Mated spermatheca96 ± 34 of 4 0.54Down
Adult carcass43 ± 44 of 4 0.20Down
Larval CNS295 ± 274 of 4 1.66Up
Larval Salivary gland1019 ± 224 of 4 5.73Up
Larval midgut387 ± 274 of 4 2.18Up
Larval tubule49 ± 24 of 4 0.30Down
Larval hindgut69 ± 54 of 4 0.39Down
Larval fat body87 ± 124 of 4 0.50Down
Larval trachea38 ± 44 of 4 0.22Down
Larval carcass27 ± 14 of 4 0.15Down
S2 cells (growing)96 ± 24 of 4 0.54Down
Whole fly177 ± 134 of 4

Looking for FBgn0027539. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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