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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027546 through 18771 annotations produced 1 hits



/// /// (CG4766 /// DmauCG4766 /// DsimCG4766):

Annotation Number : CG4766
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027546
Gbrowse : chrX:5891536-5894830 (-) // 100.0 //
Probeset : 1637635_at
Accessions : protein= NP_572287;, nucleotide= NM_132059;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0027546.
BDGP gene expression has embryonic in situ data for BcDNA:GH11415: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0027546 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain212 44 of 410.10Up
Head67 24 of 4 3.20Up
Eye47 14 of 4 2.27Up
Thoracicoabdominal ganglion412 84 of 419.70Up
Salivary gland9 21 of 4 0.44Down
Crop7 10 of 4 0.30Down
Midgut7 01 of 4 0.40Down
Tubule6 01 of 4 0.30Down
Hindgut6 03 of 4 0.30Down
Heart4 12 of 4 0.21Down
Fat body10 33 of 4 0.50Down
Ovary2 10 of 4 0.10Down
Testis5 01 of 4 0.20Down
Male accessory glands12 03 of 4 0.60Down
Virgin spermatheca7 00 of 4 0.34Down
Mated spermatheca5 10 of 4 0.25Down
Adult carcass54 74 of 4 2.60Up
Larval CNS85 74 of 4 4.06Up
Larval Salivary gland8 20 of 4 0.39Down
Larval midgut6 11 of 4 0.29Down
Larval tubule4 11 of 4 0.20Down
Larval hindgut5 02 of 4 0.27Down
Larval fat body6 10 of 4 0.30Down
Larval trachea24 44 of 4 1.18None
Larval carcass38 44 of 4 1.85Up
S2 cells (growing)61 14 of 4 2.92Up
Whole fly21 14 of 4

Looking for FBgn0027546. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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