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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0027547 through 18771 annotations produced 1 hits


Annotation Number : CG1927
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027547
Gbrowse : chr3L:1966722-1970075 (-) // 100.0 //
Probeset : 1638120_at
Accessions : protein= NP_647684;, nucleotide= NM_139427;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0027547.
BDGP gene expression has embryonic in situ data for BcDNA:GH11112: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0027547 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain390 74 of 4 1.20Up
Head808 134 of 4 2.50Up
Eye916 434 of 4 2.84Up
Thoracicoabdominal ganglion361 164 of 4 1.10None
Salivary gland372 314 of 4 1.16None
Crop1046 84 of 4 3.20Up
Midgut1162 104 of 4 3.60Up
Tubule1281 584 of 4 4.00Up
Hindgut811 124 of 4 2.50Up
Heart569 284 of 4 1.77Up
Fat body434 464 of 4 1.35Up
Ovary364 74 of 4 1.10None
Testis118 54 of 4 0.40Down
Male accessory glands746 144 of 4 2.30Up
Virgin spermatheca521 54 of 4 1.62Up
Mated spermatheca455 134 of 4 1.41Up
Adult carcass516 244 of 4 1.60Up
Larval CNS251 264 of 4 0.78Down
Larval Salivary gland258 74 of 4 0.80Down
Larval midgut974 544 of 4 3.02Up
Larval tubule745 74 of 4 2.30Up
Larval hindgut457 134 of 4 1.42Up
Larval fat body952 1054 of 4 3.00Up
Larval trachea630 1094 of 4 1.95Up
Larval carcass421 74 of 4 1.31Up
S2 cells (growing)539 124 of 4 1.67Up
Whole fly322 184 of 4

Looking for FBgn0027547. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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