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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027550 through 18771 annotations produced 1 hits



(CG6495):

Annotation Number : CG6495
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027550
Gbrowse : chr2L:10761146-10764972 (+) // 100.0 //
Probeset : 1626911_at
Accessions : protein= NP_609451;, nucleotide= NM_135607;
FlyMine data for FBgn0027550.
BDGP gene expression has embryonic in situ data for BcDNA:GH10711: 9 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0027550 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain488 ± 134 of 416.00Up
Head234 ± 214 of 4 7.70Up
Eye388 ± 254 of 412.71Up
Thoracicoabdominal ganglion438 ± 174 of 414.30Up
Salivary gland9 ± 30 of 4 0.32Down
Crop11 ± 12 of 4 0.40Down
Midgut10 ± 20 of 4 0.30Down
Tubule82 ± 104 of 4 2.70Up
Hindgut27 ± 14 of 4 0.90None
Heart28 ± 14 of 4 0.94None
Fat body57 ± 124 of 4 1.87Up
Ovary3 ± 10 of 4 0.10Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands6 ± 20 of 4 0.20Down
Virgin spermatheca206 ± 544 of 4 6.76Up
Mated spermatheca62 ± 94 of 4 2.03Up
Adult carcass74 ± 54 of 4 2.40Up
Larval CNS176 ± 84 of 4 5.79Up
Larval Salivary gland4 ± 10 of 4 0.15Down
Larval midgut6 ± 10 of 4 0.20Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut6 ± 10 of 4 0.22Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea8 ± 51 of 4 0.27Down
Larval carcass2 ± 00 of 4 0.07Down
S2 cells (growing)11 ± 10 of 4 0.38Down
Whole fly30 ± 24 of 4

Looking for FBgn0027550. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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