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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027554 through 18771 annotations produced 1 hits



(CG8042):

Annotation Number : CG8042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027554
Gbrowse : chr3L:7965548-7968108 (-) // 100.0 //
Probeset : 1624863_a_at
Accessions : protein= NP_648165; /// NP_729312;, nucleotide= NM_139908; /// NM_168246;
FlyMine data for FBgn0027554.
TRiP has 1 RNAi stocks for FBgn0027554 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain138 34 of 4 1.10None
Head114 44 of 4 0.90None
Eye201 44 of 4 1.62Up
Thoracicoabdominal ganglion155 34 of 4 1.20Up
Salivary gland309 74 of 4 2.49Up
Crop175 64 of 4 1.40Up
Midgut83 34 of 4 0.70Down
Tubule163 64 of 4 1.30Up
Hindgut129 24 of 4 1.00None
Heart131 64 of 4 1.06None
Fat body129 54 of 4 1.04None
Ovary64 14 of 4 0.50Down
Testis1018 304 of 4 8.20Up
Male accessory glands152 124 of 4 1.20None
Virgin spermatheca83 44 of 4 0.67Down
Mated spermatheca91 64 of 4 0.73Down
Adult carcass131 44 of 4 1.10None
Larval CNS69 14 of 4 0.55Down
Larval Salivary gland227 174 of 4 1.83Up
Larval midgut110 24 of 4 0.88Down
Larval tubule180 84 of 4 1.40Up
Larval hindgut94 44 of 4 0.76Down
Larval fat body160 294 of 4 1.30None
Larval trachea81 74 of 4 0.65Down
Larval carcass109 64 of 4 0.88None
S2 cells (growing)211 54 of 4 1.70Up
Whole fly124 44 of 4

Looking for FBgn0027554. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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