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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027556 through 18771 annotations produced 1 hits



(CG4928):

Annotation Number : CG4928
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027556
Gbrowse : chrX:16807230-16831444 (+) // 100.0 //
Probeset : 1625471_s_at
Accessions : protein= NP_573179; /// NP_728035;, nucleotide= NM_132951; /// NM_167552;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
FlyMine data for FBgn0027556.
BDGP gene expression has embryonic in situ data for BcDNA:GH10120: 4 pix of staining in 1 body parts.
Homophila reports that CG4928 is a close match (8e-15) to human gene UNC93B1 (NP_112192), a gene associated with Herpes simplex encephalitis, UNC93B-deficient, 610551 (3).
VDRC has 2 RNAi stocks for FBgn0027556 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.00Down
Head243 ± 254 of 4 0.90None
Eye386 ± 524 of 4 1.40None
Thoracicoabdominal ganglion31 ± 123 of 4 0.10Down
Salivary gland5290 ± 4504 of 419.21Up
Crop216 ± 104 of 4 0.80None
Midgut466 ± 304 of 4 1.70Up
Tubule1796 ± 824 of 4 6.50Up
Hindgut2634 ± 404 of 4 9.60Up
Heart24 ± 64 of 4 0.09Down
Fat body29 ± 84 of 4 0.11Down
Ovary1 ± 00 of 4 0.00Down
Testis92 ± 94 of 4 0.30Down
Male accessory glands10 ± 21 of 4 0.00Down
Virgin spermatheca32 ± 34 of 4 0.12Down
Mated spermatheca54 ± 124 of 4 0.20Down
Adult carcass217 ± 454 of 4 0.80None
Larval CNS8 ± 04 of 4 0.03Down
Larval Salivary gland497 ± 484 of 4 1.81Up
Larval midgut2106 ± 3234 of 4 7.65Up
Larval tubule1496 ± 964 of 4 5.40Up
Larval hindgut3945 ± 1004 of 414.33Up
Larval fat body18 ± 04 of 4 0.10Down
Larval trachea645 ± 404 of 4 2.34Up
Larval carcass262 ± 234 of 4 0.95None
S2 cells (growing)25 ± 04 of 4 0.09Down
Whole fly275 ± 234 of 4

Looking for FBgn0027556. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime