FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0027558 through 18771 annotations produced 1 hits

polypeptide GalNAc transferase 3 (pgant3):

Annotation Number : CG4445
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027558
Gbrowse : chr2R:2945155-2949224 (-) // 100.0 //
Probeset : 1637584_at
Accessions : protein= NP_610256;, nucleotide= NM_136412;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0004653 // polypept
FlyMine data for FBgn0027558.
Homophila reports that CG4445 is a close match (6e-97) to human gene GALNT3;HFTC;HHS (NP_004473), a gene associated with Hyperostosis-hyperphosphatemia syndrome, 610233 (3);Tumoral calcinosis, hyperphosphatemic, familial, 211900 (3).
BioGrid reports that CG4445 interacts with CG4577 CG5478 CG7524 CG7757 .
VDRC has 4 RNAi stocks for FBgn0027558 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	129 ± 5	4 of 4	1.00	None
Head	82 ± 1	4 of 4	0.60	Down
Eye	93 ± 6	4 of 4	0.72	Down
Thoracicoabdominal ganglion	95 ± 4	4 of 4	0.70	Down
Salivary gland	175 ± 10	4 of 4	1.34	Up
Crop	170 ± 5	4 of 4	1.30	Up
Midgut	176 ± 11	4 of 4	1.40	Up
Tubule	88 ± 4	4 of 4	0.70	Down
Hindgut	82 ± 2	4 of 4	0.60	Down
Heart	114 ± 3	4 of 4	0.88	None
Fat body	104 ± 3	4 of 4	0.80	None
Ovary	282 ± 4	4 of 4	2.20	Up
Testis	110 ± 2	4 of 4	0.80	None
Male accessory glands	125 ± 4	4 of 4	1.00	None
Virgin spermatheca	79 ± 4	4 of 4	0.61	Down
Mated spermatheca	109 ± 9	4 of 4	0.84	None
Adult carcass	73 ± 7	4 of 4	0.60	Down
Larval CNS	166 ± 4	4 of 4	1.27	Up
Larval Salivary gland	636 ± 22	4 of 4	4.87	Up
Larval midgut	147 ± 15	4 of 4	1.13	None
Larval tubule	154 ± 3	4 of 4	1.20	None
Larval hindgut	160 ± 4	4 of 4	1.23	None
Larval fat body	106 ± 2	4 of 4	0.80	None
Larval trachea	189 ± 10	4 of 4	1.45	Up
Larval carcass	190 ± 7	4 of 4	1.46	Up
S2 cells (growing)	294 ± 5	4 of 4	2.25	Up
Whole fly	130 ± 11	4 of 4

Looking for FBgn0027558. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720